Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2156 ATGATCAAAAGGCTTGGAACTTTGGAAGAGAAAAGAGAAAAAATAGAGGCACATCATATCAGAAATGAGATTGTAGCCTTTGGAGGTGATCCTGAGCAACAGCAAATAAATATGTCAGATGGAAATGAGATTCATGAGAATAAGGGGAGTGACAAGAGTGAAGAGGAATTACAATTAGCTGAGGACACTTCATTGGGGTCTTCCCAGAAATGCTCATCCTTTGACTTGAATGAAGAAGCTAGCAGTGAAGATAACGATGATAATGATAATGATGATGAGATTGAGGCCTGTGAAGTCGCAGCTGAGGAAAATGAGAAGGCAAAGGATGAAGGGACATCATCTAACAGAAGTAGCACAACAATAAGAGAAGGAAATAATGAACGAAGAAGTGGTGTGAGACAATATGTAAGGTCAAAGATGCCTCGGCTTCGTTGGACTCCTGAACTTCATCACTCCTTTGTGCATGCTGTTGAGAGGCTTGGTGGTCAAGAAAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTACCGTAGCAAGAAGCTTGATGAGTCGGGCCAAGTACTAAGTCAAACATACAGATCAACCAATGAACTAGGACGTATTTCTCAAGTACCCCACCCTTCCATGATTAATCTTCTTCAACATTTCAAGATGGGAAACGGTGGAATTATTCTAACAAGTAATTACAATGAGCACAGTCATTTCCAGGGTCTCCTTGAGCCCTCCTTCTCCCTTGCTCATTCACATTCAAAGGCCACCGACTCAAGATACCAGCAGCAATGGCACTTGAATCATCAACCTTTTAGAAGACCAGGTTACATAAGCAGCAACGAAGTAGCCTCCTCAACAACCTTACAAACTACTCAAGGAAGACCAATAGCTTCAAACCAAATCCAAGTAATGGGTGCAGCCAGCAGCAGAATTGCACCCATGAGACCAAGCCGATTTCTCGAAGAGAAAAAGTGGCCTCCTTTAGAAATTATGAATAATTATCATTGGAAGACCAAGAGGTTCCCTACCAATATTAATGTTATCTCTAATAGTGGGTCACAATCTGTTGCACATCAATTTGGCACCACCACTACTCCTGCATCATTCAGACCATCTGAGTTGAGCTTTGGAGACAACACAAGAATCAAAGACTATCTATCAAGCTCATCCGAGAAGCATCACAGCCACAGTTATTCCATTCCCAACAGTTTAAGAGTAGAATTGGATCCCCCATTTCGGATTAAGTTGAATCAAGACATGATGCAGAAAGATAAGCAATTGGTGCCAGATCTGCAATTGGGTTTGAATCGCAAACATGATGACAATGATGATGGCGATAATGATAATTGCAGAGAGACCCAAGAAATCAGCACTAAACTTTCACTTTCTTAG 1431 0.4179 MIKRLGTLEEKREKIEAHHIRNEIVAFGGDPEQQQINMSDGNEIHENKGSDKSEEELQLAEDTSLGSSQKCSSFDLNEEASSEDNDDNDNDDEIEACEVAAEENEKAKDEGTSSNRSSTTIREGNNERRSGVRQYVRSKMPRLRWTPELHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQTYRSTNELGRISQVPHPSMINLLQHFKMGNGGIILTSNYNEHSHFQGLLEPSFSLAHSHSKATDSRYQQQWHLNHQPFRRPGYISSNEVASSTTLQTTQGRPIASNQIQVMGAASSRIAPMRPSRFLEEKKWPPLEIMNNYHWKTKRFPTNINVISNSGSQSVAHQFGTTTTPASFRPSELSFGDNTRIKDYLSSSSEKHHSHSYSIPNSLRVELDPPFRIKLNQDMMQKDKQLVPDLQLGLNRKHDDNDDGDNDNCRETQEISTKLSLS* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2156 476 MobiDBLite consensus disorder prediction 79 99 - -
Dod04g2156 476 MobiDBLite consensus disorder prediction 448 466 - -
Dod04g2156 476 SUPERFAMILY Homeodomain-like 139 195 IPR009057 -
Dod04g2156 476 MobiDBLite consensus disorder prediction 44 59 - -
Dod04g2156 476 Gene3D - 140 197 - -
Dod04g2156 476 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 38 476 IPR044848 GO:0003700
Dod04g2156 476 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 141 196 IPR006447 GO:0003677
Dod04g2156 476 MobiDBLite consensus disorder prediction 448 476 - -
Dod04g2156 476 Pfam Myb-like DNA-binding domain 143 193 IPR001005 -
Dod04g2156 476 Coils Coil 90 110 - -
Dod04g2156 476 MobiDBLite consensus disorder prediction 28 132 - -
Dod04g2156 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 197 IPR017930 -
Dod04g2156 476 MobiDBLite consensus disorder prediction 60 78 - -
Dod04g2156 476 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 38 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2156 Dod-Chr4 45157699 45163691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2156 132 202 G2-like Transcription Factor Family AT2G42660 77.465 1.06e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod04g2156 Myb_DNA-binding 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2156 - - gmx:100808625 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2156 04 45157699 45163691 Dod03g0537 03 6466847 6472435 PCT