Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2107 ATGGCGGGGGTTTCTCTGAAGTGCGGCGACTGTGGTGCTCTGTTAAGGTCCGTTGAAGAAGCGCAGGAGCACGCCGAGCTCACCAAACACTCCAACTTCTCCGAGTCCACCGAACCCGTTCTCAACCTCATCTGCACCGCTTGCGGCAAGCCCTGCCGATCCAAAACCGAGAGTGATTTGCATACAAAAAGAACCGGGCATACCGAGTTTGAAGATAAGACTTCGGAGGCAGCAAAACCAATAAGTTTAGAGGCTCCAAAGGTGGATGCAAGTGCTACCTCAGAAGAGGCTTCCAAGGCAGCTGCTGGTCAAGATGAAGATATGGTTGCTCCAGAAGTTGACAAAAAGTTACTCGAGGAACTTGAATCAATGGGATTTTCAACAGCGCGAGCCACGCGTGCACTTCATTATTCTGGTAATGCTGGCCTTGAGGCCGCTGTAAATTGGATAGTAGAGCATGAGAATGACCCTGACATAGATCAGATGCCCTTGGTACCTGTCAACACCAAAGTTGAGGCTCCTAAACCTTCTCTTACCCCAGAAGAACTGAAGGCCAAGCAACAGGAGCTAAGGGAGAGAGCTCGCAAGAAGAAAGAAGAGGAAGAAAAGAGAATGGAAAGAGAAAAAGAAAAGGAGAGAATTCGCATCGGCAAGGAGTTGCTGGAAGCAAAGAGGATTGAAGAAGAGAATGAGAGAAAACGGTTGTTGGCTATACGAAAAGCGGAGAAAGAGGAAGAGCAAAGAGCTAGAGAGAAAATCAAGCAGAAGTTGGAAGAAGACAAGGCAGAAAGAAGGCGAAAACTCGGATTGCCTCCAGAGGAGCCTTCAGAAGCCAAACCCTCAACTGTTGTCGAGGAGAAAAAGAGTTTTCTGCCAGTTCGGCCTGCCACCAAAGCTGAGCAAATGAGAGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAAAGTGAAAAGGGCGTTCCAAACACTACTAACTTATGTGGGGAATGTTGCCAGAAATCCTGATGAGGAAAAATTCAGGAAAATCCGACTTACCAACCAAACGTTTCAGGAAAGAGTTGGTGCCTTGAAGGGGGGCATTGAATTCCTGGAAATTTGCGGGTTTGAGAAGATCGATCGTGGTGAGTTTTTGTTTTTGCCCAGGGACAAGGTTGAGATGGCAGTCCTGAATTCTGCTGGGTCTGAACTAGACTCTGCAATTAAGAATCCCTTTTTCGGAGTTCTTTAA 1239 0.4762 MAGVSLKCGDCGALLRSVEEAQEHAELTKHSNFSESTEPVLNLICTACGKPCRSKTESDLHTKRTGHTEFEDKTSEAAKPISLEAPKVDASATSEEASKAAAGQDEDMVAPEVDKKLLEELESMGFSTARATRALHYSGNAGLEAAVNWIVEHENDPDIDQMPLVPVNTKVEAPKPSLTPEELKAKQQELRERARKKKEEEEKRMEREKEKERIRIGKELLEAKRIEEENERKRLLAIRKAEKEEEQRAREKIKQKLEEDKAERRRKLGLPPEEPSEAKPSTVVEEKKSFLPVRPATKAEQMRECLRSLKQNHKEDDAKVKRAFQTLLTYVGNVARNPDEEKFRKIRLTNQTFQERVGALKGGIEFLEICGFEKIDRGEFLFLPRDKVEMAVLNSAGSELDSAIKNPFFGVL* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2107 412 MobiDBLite consensus disorder prediction 177 213 - -
Dod04g2107 412 Gene3D - 300 402 - -
Dod04g2107 412 Coils Coil 218 263 - -
Dod04g2107 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Dod04g2107 412 SUPERFAMILY PUG domain-like 294 408 IPR036339 -
Dod04g2107 412 SUPERFAMILY UBA-like 97 165 IPR009060 GO:0005515
Dod04g2107 412 SMART uba_6 114 152 IPR015940 -
Dod04g2107 412 Pfam PUB domain 319 389 IPR018997 -
Dod04g2107 412 CDD UBA_PUB_plant 112 160 - -
Dod04g2107 412 MobiDBLite consensus disorder prediction 53 107 - -
Dod04g2107 412 MobiDBLite consensus disorder prediction 242 287 - -
Dod04g2107 412 Coils Coil 183 215 - -
Dod04g2107 412 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Dod04g2107 412 CDD PUB_UBA_plant 306 412 - -
Dod04g2107 412 PANTHER F13M7.16 PROTEIN 1 412 - -
Dod04g2107 412 SMART PGNneu 322 385 - -
Dod04g2107 412 Gene3D - 114 160 - -
Dod04g2107 412 MobiDBLite consensus disorder prediction 54 78 - -
Dod04g2107 412 MobiDBLite consensus disorder prediction 242 284 - -
Dod04g2107 412 Pfam UBA/TS-N domain 118 150 IPR015940 -
Dod04g2107 412 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Dod04g2107 412 MobiDBLite consensus disorder prediction 171 213 - -
Dod04g2107 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 112 153 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2107 Dod-Chr4 44721553 44727462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2107 106 412 C2H2 Transcription Factor Family AT1G04850 80.645 1.81e-151 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2107 K24348 - gmx:100794687 676.011