Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2092 ATGGGTGATGGGACTTACACTGTTACTTATGTGGTGCCGAAGAGAGGGAATTATATGGTCAGTGTTGAGTGTAATGGGAAACCAATCATGGGTAGTCCTTTCCCTGTGTTCTTCAGTGCAGGTAGTAGTAGTAACGGAGGGCTACTGGGTTTAGCTCCAGCATCTACATTTCCGAATCTGATTAACCAAACTATGCCAAACATGCCAAATTACTCTGGGTCTGTTTCAGGGGCATTCCCAGGATTGTTGGGAATGATTCCAGGGATTGTTGCTGGGGCCTCCGGGGGTGCTATTTTGCCTGGAATTGGGGCCTCACTGGGGGAAGTTTGTCGTGACTATCTCAATGGGCGATGTGCAAAAGTTGATTGTAAGTTGAATCACCCACCTCATAATTTGCTAATGACTGCCTTAGCTGCAACAACCTCTATGGGAACACTTAGCCAAGCTCCGATGGCACCTTCTGCTGCTGCAATGGCTGCTGCTCAGGCAATAGTTGCTGCCCAAGCCCTTCAAGCCCATGCAGCTCAGGTGCAAGCTCAGTCAGCGAAAGATTCCGCTGGTTCACCTGAAAAAGCTAGTAAGGATGATGCACTGAAGAAGACTCTCCAAGTTAGCAATCTTAGCCCACTTCTCACTGTGGAACAGCTAAAACAACTCTTTGGTTTCTGTGGCACTGTTGTTGAATGTACCATCACTGATTCAAAGCACTTTGCTTATATAGAATACTCAAAACCTGAAGAGGCATCTGCTGCTCTGGCATTAAATAACATAGAAGTTGGGGGCCGGCCTTTGAATGTTGAAATGGCCAAATCACTTCTGCAGAAACCATCTCTTGTCAATTCTTCACTTGCTTCATCCTCTCTGCCTTTGATGATGCAGCAAGCTGTTGCAATGCAACAGATGCAATTCCAGCAAGCGCTGCTTATGCAGCAAACTATGACTGCACAGCAAGCTGCCAACAGAGCTGCAACCATGAAATCCGCAACGGAATTAGCAGCAGCCCGAGCTGCTGAAATAAGTAAGAAATTGAAAGCTGATGGACCTGAAATCGAAGAAAAGGAGACAAAGCAGAAATCCAGATCACCTTCTCCCCCTCGAGCAAGATCTCGGTCAAAGTCTAGATCTCCTGTCAGTCACCGGAGGAGGAGGAGGTCTCGTTCATACTCACCTGCTCGCTATTCTAGGGGTCATCGGTCCAGGTCACCATTCAGATCCCATCACCATTCAAGTTATGAAAGGGAACGGCGGCCCTATAGGGACATTAGGGAACACAGTGATAGAAACAGAAGACGAGATTCAGACAGATTACTTGATCGACATCCATCTGCTTCAAGAAGAAACAGAAGTAGGAGTGTGAGCCCTCTTAGAAGGAAATCACATCGAATTGAGTCTGTTTCTCCAAAACGTCACAGAGAAAGTTCACCTCAGAGGGGAAGGAAACCATCACGTGCTGATTCTGGCTCTCCAAGTCATCACAGAGGAAGTAGGTCATCTCCAAAGATTGATGAAAGCAAACTAAGAAACAGAAGGCGCTCAAGGTCAAGATCTTCAGATGATAAACACTCTGTTGATAAAAATAAAGAATTATTTCATGCAAAGTCTAAGCAGAGAGAGAGAAGGCGGTCCAGGTCGGTATCTGTGGATGAGAAGCCGCATAGGAGGAGCCGATCATCGCCAAGAAGAGTGGATGAAAGTAGATCCAAGCATCAGAAGCGGTCCAGATCAAAATCTGTGGATGATAAACACAGCTTGCCTGAGAAATCTGATGAAAGCAGACATCGAAGGTCAAAGCACTGTGATAAAAGACATTCCAGATCAAGATCGACGGAAAGTAGGGATCAAACTGATGAGAGAGGGGATGAAAGTAAAAATGAGAAGTCAAAACATCGTGATACTAAAAGGCACAGGTCCAAATCTGTAGATCGGAAGCATCGTTCTAAGGATAAATCAGGTGATAGTAAGGATAAGAAATCAAAGCATGGTGATAGAAGGCGTTCAAGGTCAATATCATTAGAAGGCAAGTATGACAAAGGAGGCAGTTCATCACATAAGAATTTGGATGAGAGCAATTTTGAACATGGACAACTCAGGTCTAGTTCCCCGTGA 2106 0.4544 MGDGTYTVTYVVPKRGNYMVSVECNGKPIMGSPFPVFFSAGSSSNGGLLGLAPASTFPNLINQTMPNMPNYSGSVSGAFPGLLGMIPGIVAGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSAGSPEKASKDDALKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKHFAYIEYSKPEEASAALALNNIEVGGRPLNVEMAKSLLQKPSLVNSSLASSSLPLMMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATELAAARAAEISKKLKADGPEIEEKETKQKSRSPSPPRARSRSKSRSPVSHRRRRRSRSYSPARYSRGHRSRSPFRSHHHSSYERERRPYRDIREHSDRNRRRDSDRLLDRHPSASRRNRSRSVSPLRRKSHRIESVSPKRHRESSPQRGRKPSRADSGSPSHHRGSRSSPKIDESKLRNRRRSRSRSSDDKHSVDKNKELFHAKSKQRERRRSRSVSVDEKPHRRSRSSPRRVDESRSKHQKRSRSKSVDDKHSLPEKSDESRHRRSKHCDKRHSRSRSTESRDQTDERGDESKNEKSKHRDTKRHRSKSVDRKHRSKDKSGDSKDKKSKHGDRRRSRSISLEGKYDKGGSSSHKNLDESNFEHGQLRSSSP* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2092 701 MobiDBLite consensus disorder prediction 405 445 - -
Dod04g2092 701 MobiDBLite consensus disorder prediction 342 361 - -
Dod04g2092 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 264 IPR000504 GO:0003723
Dod04g2092 701 MobiDBLite consensus disorder prediction 484 595 - -
Dod04g2092 701 ProSiteProfiles Zinc finger C3H1-type profile. 109 130 IPR000571 GO:0046872
Dod04g2092 701 MobiDBLite consensus disorder prediction 342 701 - -
Dod04g2092 701 Gene3D Immunoglobulins 1 45 IPR013783 -
Dod04g2092 701 SUPERFAMILY E set domains 2 40 IPR014756 -
Dod04g2092 701 SMART rrm1_1 201 267 IPR000504 GO:0003723
Dod04g2092 701 MobiDBLite consensus disorder prediction 363 404 - -
Dod04g2092 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 271 IPR000504 GO:0003723
Dod04g2092 701 MobiDBLite consensus disorder prediction 603 628 - -
Dod04g2092 701 MobiDBLite consensus disorder prediction 629 643 - -
Dod04g2092 701 Gene3D - 160 277 IPR012677 -
Dod04g2092 701 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 567 - -
Dod04g2092 701 ProSiteProfiles Filamin/ABP280 repeat profile. 1 38 IPR017868 -
Dod04g2092 701 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 1 567 - -
Dod04g2092 701 CDD RRM_SF 202 267 - -
Dod04g2092 701 MobiDBLite consensus disorder prediction 456 472 - -
Dod04g2092 701 Pfam Filamin/ABP280 repeat 2 34 IPR017868 -
Dod04g2092 701 MobiDBLite consensus disorder prediction 644 691 - -
Dod04g2092 701 SUPERFAMILY RNA-binding domain, RBD 188 275 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2092 187 270 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 2.95e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2092 - - gmx:100790138 863.218