LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g2059	ATGGATAGTCAAGATCAAAGGAAAACTCACACTCCAGGGCACGAGAGTCATGGAGTTCATGTGTGTCACAAATGTGGATGGCCCTTCCCAAATCCACATCCAAGTGCCAAGCACAGGCGTGCTCACAAGAAGATCTGTGGAACCATTGGAGGTTACAAAGTGTGCATCTCTGAGGAACAAGCCCGTTTGAACGGCTCAGATGATGAACATGGTTCTGATGATGATAACAAATCACCAGGTTCAAAGGGCTTGGAGACAGGCAATAATGAGAAGGATGATAATGGAATCGGTGCAAAAGTACATAGATCAGAAGATGAGGTGTTTTCAGATGCAGTTGCAGACTTTTCAGATGGTGGACTTAGTCAAGGGGTTAAGGAACGTTTGCAAGAAGAAAGTTTGGACTCAGGTACTAGTGTGAAAAACGTGGACAAAAAAGATCCAAAATTTTCAGGGTCTTCCGAGCACAGTGATCTTAATGATGTGAGCCAGTTAACTCTTGAGGCAAGGGATGACTGCCAAGTTCAGCATCCTGAGATTTTGCAAGGTGAAAGGGTTGAAGAGAGAAACACACTAGAGTTGCAAAGTCAATTGTCAGGCACTACTGTGGATCCATTATCCAATTCAATTGCAGATTTGAGGGCTGAAGAATCAACTATTGTCCATAGCGATGATATCTTTGGCTTGTCAGCTGAATCACATCTCAGCCAAGCTGAAGCCACTCCAGATGTCCTGCCAGCAAATAAGAGTTTTTCCAGTTTGACATCTTCTACTGTGGAGACTAATTTGAACGGAAAGGATGAGATCAAATCAGAGAGCAGAGAAGTCGAAATTGTAGCCCCTTCTGATACTGTTGTAGGTGAAACATGTGAAGTTGAGTCTAAAATTGAAGTTAGTGATGCAGTTTACTCAGATCATCAAGTGGCTGAGGAAGCTGTTAATCTGAAGGAAAAGGACAGTGTGGAGTTCCTTTCTGTGCTGGCACAAGATGACCCCTCATGTGGGTCCAACTCTGTTGCAATAGCAAATGCTTCAACAAATGATGTTCAGGTAGAGTCTTCACATGTGATACAGTTTGCTAATTCTAGTGATATCAAGATTTTGCAGGAAAAAGAAGCAAATGTTGATGCCAATACTCTTCCTACTCATGATGATAGAACTAATGTACCACTTCCTCAGGGTGAATGTGAAGATTTTAAAGACCACAAAGGAGTGGTATCCCAAAATCATTCTTCAGGCCTACATTCATCTGAGTCATTGAAGCATGAGGAAGATGACTTAAAGGATGTAGATACTGAGGAAAATAATTTTCTTTTTAACCCAAGCCAATCGGCTGAAACAAGTGATGTCCTCTCTCTGGATATGCATGATGTTATGGATAGTTCTGGCAGTTTGAACAAGGAGCTGGTCAACAGTGAGCCTATGGCTGAAGAAATGCATGCTGAAGAGCACACTGAAGTTTCTCCGGTCAAGCACACCATTGAAAGTTCTCAAAGATCAGTTGAAATTGGTGCGTCTATGAATGCTATAGAATCTGAGAAGAATGAGAGCCATATGGTACACTTTTCTGAAGAGCAAGGGCCTGTTGATGTTGAAAATTCACAGCAGATATGTTTACCAGACAGTATTTTAATGTCCTCATCAAATGAGAATCCAAGGGACACATCCTTTGATGCTGTGACTAGTGAAACAACTAGCGTAATCAGCATAGACAATGCAAGTCATCATGAGAAAAACAGAACTGAAATAAATGATGTAGTTGTAGATCGTAAGGATGTAGGAGCTGATTTGGAAAATGATCTCGGAACTCAAACAAATGATCTTCACCCCAGTGAGCTAATGCAATTGGAAAGCGAGCAATCAAATGACTTATCTAAGAGTGACGATGCTGGTGAAATGGATAAAATTGAAAACTTTGATATTACTGATGCTCAATGTAGAGAAACTGCTAGCAATCAGATTGCAAGCCCAGTTATATCAGAGGCTGTAATTGATGAGTCCACAATAAAGTCAACAGGCATAGAGTGCACAAATATAGGTCTGCAATCAGATTCTCAGGAAGACACAAAAGAAGATGCAACCAATAGCAGTGTTGAAGTACATGAGGAATGTAACAGATCTGTTGGTACTTCTGCTGACTCACATCAAACACAGGATACAGAACCGTTAGTGGAGGCTGCAGAAGACCTAGCTGAGAAGTATGCATCACTTTCTTCTTTAAATGCTTTGCCATCTGCTCAAAATGATTTTGCTGTTGAAGATAATCAAGAGGGTCAGCCTGGCAAGGAAGTTTCTGTAACTACTGCTATGCCTGTTCAAGATCAAAACAGTAATAACTCGATTAAACATAGTTCTTCTGGAATTGATGCTTCAGTTTACTCCAGTAGCAGGTGTGACAGTTTGGAAGCCAACTGGGGCTCTGTTTCAGTTCTCTCAATGCAATCCGATGCAACAGCTGTTATTGATGCTGAAACTTTACCATCTACTGGTTTGGCGGCATCAACAGAAGCTGGGGAAGGGCAAACCAACTTGAAAAACCATAAAGCTGCATCTGAGAAACAGCAGTCCGGGAAATCAGAAATGTTTGAAGCACCATCCTTCATGACATTGGTTGAACCAGGACATGCAGTTAGTCATAAAGCACATGCTTCTGAAGGCCAGAAGGGAAAGAATCCACAACAGCCAACTCCCACTTCAGAGGCTGGTTGGTTTCCCTCTCTAACACAGGTGACTAGTGCGTCTCAAGGGAGAAACAAGAATGAAGAGATAATAGCCAAGGTAACAAACTGGAGCGCCAGTAAGGAGCACACCCCTCTGAAGAGCCTGTTGGGTGAGGCTGCCCATAGCAACAACCCAAAACTGGAAGAAAACTCAGTGAACCAAAAGAATGGTAAAGCTCCAGAGAGCAGTGGTTCTGGATTGACAACTGTTAACTCCATTCTGGGTCCCGAATCCCCTTCAGCAAAAGCTGTGATAGGAGATGCTGCAAAAGAATGGAATTCACCAGCAAGATATCCTGCAGACATGAAGAGGGATAAAAGGAAAGCCAAGAGCAGACCTTACTGGATACAACTAGTGTGCTGCTCAACAGTGGACCTTCAGAGAAGGTAG	3108	0.4247	MDSQDQRKTHTPGHESHGVHVCHKCGWPFPNPHPSAKHRRAHKKICGTIGGYKVCISEEQARLNGSDDEHGSDDDNKSPGSKGLETGNNEKDDNGIGAKVHRSEDEVFSDAVADFSDGGLSQGVKERLQEESLDSGTSVKNVDKKDPKFSGSSEHSDLNDVSQLTLEARDDCQVQHPEILQGERVEERNTLELQSQLSGTTVDPLSNSIADLRAEESTIVHSDDIFGLSAESHLSQAEATPDVLPANKSFSSLTSSTVETNLNGKDEIKSESREVEIVAPSDTVVGETCEVESKIEVSDAVYSDHQVAEEAVNLKEKDSVEFLSVLAQDDPSCGSNSVAIANASTNDVQVESSHVIQFANSSDIKILQEKEANVDANTLPTHDDRTNVPLPQGECEDFKDHKGVVSQNHSSGLHSSESLKHEEDDLKDVDTEENNFLFNPSQSAETSDVLSLDMHDVMDSSGSLNKELVNSEPMAEEMHAEEHTEVSPVKHTIESSQRSVEIGASMNAIESEKNESHMVHFSEEQGPVDVENSQQICLPDSILMSSSNENPRDTSFDAVTSETTSVISIDNASHHEKNRTEINDVVVDRKDVGADLENDLGTQTNDLHPSELMQLESEQSNDLSKSDDAGEMDKIENFDITDAQCRETASNQIASPVISEAVIDESTIKSTGIECTNIGLQSDSQEDTKEDATNSSVEVHEECNRSVGTSADSHQTQDTEPLVEAAEDLAEKYASLSSLNALPSAQNDFAVEDNQEGQPGKEVSVTTAMPVQDQNSNNSIKHSSSGIDASVYSSSRCDSLEANWGSVSVLSMQSDATAVIDAETLPSTGLAASTEAGEGQTNLKNHKAASEKQQSGKSEMFEAPSFMTLVEPGHAVSHKAHASEGQKGKNPQQPTPTSEAGWFPSLTQVTSASQGRNKNEEIIAKVTNWSASKEHTPLKSLLGEAAHSNNPKLEENSVNQKNGKAPESSGSGLTTVNSILGPESPSAKAVIGDAAKEWNSPARYPADMKRDKRKAKSRPYWIQLVCCSTVDLQRR*	1036

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	684	698	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	886	903	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	950	974	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	944	974	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	404	427	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	699	719	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	127	153	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	596	629	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	679	719	-	-
	Dod04g2059	1035	PANTHER	PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN	1	1030	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	598	620	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	830	858	-	-
	Dod04g2059	1035	PANTHER	PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN	1	1030	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	63	109	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	1	21	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	63	164	-	-
	Dod04g2059	1035	MobiDBLite	consensus disorder prediction	877	903	-	-
	Dod04g2059	1035	ProSitePatterns	Zinc finger C2H2 type domain signature.	22	42	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g2059	Dod-Chr4	44117701	44122468	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Dod04g2059		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g2059	-		-	gmx:100820280	1060.83