Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2056 ATGGATGACGATTTCGAGTTCCCAACTGCCGGCAACAACTTCGACGAGGAAGACATGGACATGGGAATTCCCGATGGGGAGGAGGAGGAGGACGACACCCTCAGCCCTGTCCTCAAGGTCGGAGAAGAGAAGGAGATTGGGAAGGGTGGCCTCAAGAAGAAGCTCCTCAAGGAAGGTGAAAGCTGGGAAACACCTAGCAAAGGAGACGAAGTCGAAGTGCATTACACCGGAACATTGCTCGATGGAACCCAATTTGATTCTAGCCGTGAGAGGGGCACCCCTTTCAAGTTCAAGCTTGGCCAAGGCCAAGTGATCAAGGGGTGGGATGAAGGTATCAAAACGATGAAGAAGGGTGAAAATGCCATCTTCACAATACCCCCAGAATTGGCTTATGGGGAGTCTGGGTCTCCTCCCACTATCCCTCCAAATGCAACTCTGCAGTTCGATGTGGAGCTGCTGTCTTGGACCAGTGTCAAGGACATTTGCAAGGATGGCGGGATATTCAAGAAGATTGTCACTGAGGGGGAGAAATGGGATAATCCTAAGGACCTCGATGAAGTGCTTGTTAAGTATGAGGCTAGGCTTGAAGATGGGACAGTCATTTCAAAATCTGATGGCGTGGAGTTCACTGTGGAAGAAGGCGCTGTACCTCCGAATGCTTCACTCCAAATAGATCTCGAATTAATCTCTTGGAAGACTGTATCTGATGTCACTAAGGATAGGAATGTTCTCAAGAAGACTTTGAAGGAAGGAGAGGGATATGAGCGACCCAATGATGGAGCTGTTGTTCAAGTGAAACTCATTGGCAAGCTGCAAGATGGGACTGTCTTCATTAAGAAGGGTCATGATGAAGAACAGCCATTTGAGTTCAAGATCGATGAAGAGCAAGTAATTGATGGACTTGACAGAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCACTGGTGATCATACAGCCTGAATACGCTTTTGGTTCATCTGGTTCATCTCAAGAACTGGCCACTGTTCCTCCGAACTCCACTGTGTACTATGAAGTTGAGCTGGTTTCCTTTGTAAAGGAAAAGGAATCGTGGGATTTAAATACTCAGGAGAAGATTGAGGCAGCTGGAAAGAAGAAGGAAGAAGGGAATGCATTGTTCAAGGCTGGTAAATATGAAAGAGCATCAAAAAGATATGAAAAGGCTATAAGGTATATTGAGTATGATTCCTCCTTCAGTGACGAAGAGAAACAGAAGGCAAAGGTGTTGAAAATCACGTGCAACCTCAATAATGCAGCCTGTAAGCTGAAACTCAAGGACTACAAACAGGCAGAGAAGTTGTGCACCAAGGTATTAGAGCTTGATAGTAGGAATGTGAAGGCACTGTACCGGAGGGCACAAGCATATATTCAACTTGTGGACTTGGATCTGGCTGAGATGGACATTAAGAAAGCTCTTGAGATTGAGCCAGACAATAGGGATGTGAAGATTGAGTACAAGATATTGAAGGATAAGGTGAGGGAATACAACAAGAAGGATGCACAGTTTTACGGCAGCATATTTGCGAAAATGAACAAAGTGGAACAAGCAAAAACTGCATCAGCAAAAAGGGAGCCTGTGCCAATGACTGTTGACAGTAAAGCTTAG 1626 0.4551 MDDDFEFPTAGNNFDEEDMDMGIPDGEEEEDDTLSPVLKVGEEKEIGKGGLKKKLLKEGESWETPSKGDEVEVHYTGTLLDGTQFDSSRERGTPFKFKLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGEKWDNPKDLDEVLVKYEARLEDGTVISKSDGVEFTVEEGAVPPNASLQIDLELISWKTVSDVTKDRNVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFIKKGHDEEQPFEFKIDEEQVIDGLDRAVKNMKKGEIALVIIQPEYAFGSSGSSQELATVPPNSTVYYEVELVSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKAGKYERASKRYEKAIRYIEYDSSFSDEEKQKAKVLKITCNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEMDIKKALEIEPDNRDVKIEYKILKDKVREYNKKDAQFYGSIFAKMNKVEQAKTASAKREPVPMTVDSKA* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2056 541 SUPERFAMILY FKBP-like 40 160 - -
Dod04g2056 541 Pfam Tetratricopeptide repeat 453 485 IPR019734 GO:0005515
Dod04g2056 541 PANTHER PEPTIDYLPROLYL ISOMERASE 352 522 - -
Dod04g2056 541 SUPERFAMILY FKBP-like 234 369 - -
Dod04g2056 541 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
Dod04g2056 541 Gene3D - 160 217 IPR046357 GO:0003755
Dod04g2056 541 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 212 239 - -
Dod04g2056 541 Coils Coil 485 505 - -
Dod04g2056 541 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 352 522 - -
Dod04g2056 541 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 20 213 - -
Dod04g2056 541 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 241 351 - -
Dod04g2056 541 Gene3D - 233 354 IPR046357 GO:0003755
Dod04g2056 541 SMART tpr_5 369 402 IPR019734 GO:0005515
Dod04g2056 541 SMART tpr_5 418 451 IPR019734 GO:0005515
Dod04g2056 541 SMART tpr_5 452 485 IPR019734 GO:0005515
Dod04g2056 541 SUPERFAMILY TPR-like 358 517 IPR011990 GO:0005515
Dod04g2056 541 Gene3D - 43 159 IPR046357 GO:0003755
Dod04g2056 541 MobiDBLite consensus disorder prediction 1 32 - -
Dod04g2056 541 PANTHER PEPTIDYLPROLYL ISOMERASE 241 351 - -
Dod04g2056 541 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 68 156 IPR001179 GO:0003755
Dod04g2056 541 PANTHER PEPTIDYLPROLYL ISOMERASE 20 213 - -
Dod04g2056 541 PANTHER PEPTIDYLPROLYL ISOMERASE 212 239 - -
Dod04g2056 541 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 254 349 IPR001179 GO:0003755
Dod04g2056 541 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 63 153 IPR001179 GO:0003755
Dod04g2056 541 MobiDBLite consensus disorder prediction 1 34 - -
Dod04g2056 541 Gene3D Tetratricopeptide repeat domain 355 512 IPR011990 GO:0005515
Dod04g2056 541 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 260 352 IPR001179 GO:0003755
Dod04g2056 541 SUPERFAMILY FKBP-like 160 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2056 Dod-Chr4 44087991 44090982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2056 1 541 Calmodulin-binding Proteins AT5G48570 68.376 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2056 K09571 - gmx:100810243 890.952