LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g2043	ATGAGTGTGCGGGCTAACATGTTGAAATCCTTGGGGAACAGCCTCAGCTTTCAACAAAGCTACTGTCTACAGGACAAGACTCAAGTTGATAGTGCTGATGAGTCAGTAGTGCATGGTGCAAAGTTGGCTGTGCACCGAGCAAACTTAGAGATTATTAGCTTGGAGGACGGCAAGAAATGCACGTGTGACCGCATCAATATTGAAGATATAGAGAGTGCAGGGGGTGGAACCAAGATTGGCGCGTGCAAAGAGCATGATGCTGAAGCCAATAGTTCTTTTGCTCATGCTGTCATCAACATGGCCGGGATGCTCATAGGTTTGGGGCAACTATCAACCCCATATGCTCTAGAGAGTGGAGGTTGGGCATCAGCGTTCTTGCTTATAGGACTTGGTATGATGTGTGCTTATACTTCTCATATACTTGGGAAGTGCCTTGAAAAGAACCCCAAGTTAAGAAGTTACGTTGAAATTGGGGACCATGCATTTGGAACAAAAGGAAGGTACCTAGTTGCAACATTCATCTACATGGAGATCTTCATGGCCCTTGTTTCCTGCACCATCTCGTTGCATGACAACTTGATCACTGTCTTCATGGGGACGCATCTTAAGCTGCAGCTGGCTAAGTTATCCACATCACAGCTCCTGACCGTGGTGGCAGTGTTAATTGCTCTGCCTAGCCTGTGGCTCAGAGATCTCTCTTCCATATCTTTCCTTTCAACTGTTGGCATTCTCATGTCTCTTGTCGTCTCTGTATCCGTTGCATCCACTGCAATTTTCGGAGCTGTCCGTTTCAATCATAGCATACCTGTCCTCAAGCTCCACAATATTCCATCCATATTTGACATTTACTTCTTCAGCTTTGGAGGACACATTGTTTTCCCTAATTTATACAAATCCATGAAAGAACCCTCAAAGTTTACCAAGGTTTCTATTGTGAGTTTCACATTAGTAACAGCACTTTATACAACAGTGGGGTTCACGGGTGCAAAAATGTTTGGGCCTGATGTTAATTCTCAAGTAACTCGTAGCATGCCACCAAAGCAAATTGTAACAAAGATTGCTCTATGGGCAACCGTGCTCACCCCTATGACCAAATATGCGCTTGAATTTGCACCATTTGCTATTCAGCTGGAGCACAGGCTTCCCATTTCCATGAGTGGCAAGGCAAAAATGGTAATCAGGGGAAGTGTAGGTTCATTTTTGCTTCTGGTTATATTAGCACTTGCTCTGTTAGTACCATATTTTGAGCATGTACTCAGCCTCACTGGCTCCTTAGTAAGTGTTGCCCTATGTTTGATTTTCCCCTGTGCCTTCTACATAAAGATTTGCTGGGGTCAAATATCAAAGCCTCTCTTAGCCCTGAACATGTCTCTAATCACATTTGGGATTTTCCTTGGGGTGATGGGCACCGTTTCCTTCTCAAAATTACTAGTGAAAAATTTTCTAGCAGCTCACTCGGCTTGA	1464	0.4426	MSVRANMLKSLGNSLSFQQSYCLQDKTQVDSADESVVHGAKLAVHRANLEIISLEDGKKCTCDRINIEDIESAGGGTKIGACKEHDAEANSSFAHAVINMAGMLIGLGQLSTPYALESGGWASAFLLIGLGMMCAYTSHILGKCLEKNPKLRSYVEIGDHAFGTKGRYLVATFIYMEIFMALVSCTISLHDNLITVFMGTHLKLQLAKLSTSQLLTVVAVLIALPSLWLRDLSSISFLSTVGILMSLVVSVSVASTAIFGAVRFNHSIPVLKLHNIPSIFDIYFFSFGGHIVFPNLYKSMKEPSKFTKVSIVSFTLVTALYTTVGFTGAKMFGPDVNSQVTRSMPPKQIVTKIALWATVLTPMTKYALEFAPFAIQLEHRLPISMSGKAKMVIRGSVGSFLLLVILALALLVPYFEHVLSLTGSLVSVALCLIFPCAFYIKICWGQISKPLLALNMSLITFGIFLGVMGTVSFSKLLVKNFLAAHSA*	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g2043	487	PANTHER	AMINO ACID TRANSPORTER AVT1H	34	483	-	-
	Dod04g2043	487	Pfam	Transmembrane amino acid transporter protein	90	470	IPR013057	-
	Dod04g2043	487	PANTHER	OS05G0424000 PROTEIN-RELATED	34	483	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g2043	Dod-Chr4	43962793	43964966	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g2043	54	485	Amino Acid or Auxin Permease AAAP Family	AT5G16740	60.000	2.40e-165	472

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g2043	-		-	gmx:100787423	676.781