Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2038 ATGTCACCTGCTGGTGATGAATATGATATTGATGATCTGTTTCGAGAAGCTCAAACAAGATGGCTGAAGCCTGCGGAAGTGATGTACATTTTACAGAATCATGAGAAGTACCAGTTCACCCAAGAGCCCCCGCAAAAGCCCACCAGTGGGTCCCTGTTTCTGTTTAACAGAAGAGTCCTGCGTTTCTTCCGTAGAGATGGTCATAACTGGCGGAAGAAAAAAGATGGAAGAACTGTGGGAGAAGCACACGAACGGCTTAAGGTTGGAAATGTTGAGGCCTTAAATTGTTACTATGCACATGGAGAGCAGAAATCTACTTTCCAGAGGAGGAGCTATTGGATGTTGAATCCGGAGTATGAGCATATTGTACTTGTGCATTATAGAGAAACAAGTGAGGGAAAGTCCAATTCTGGACCTGGCACACAATTGTCACCGGATCCTTCTGCATTTATTCAGAGTCCTAGCTCATATTCTACTCAGAACCCACCGTCAACATCCGTACTTAGTGATCCATATGAACCTACTCAGAGTTTCTCCAGCCCTGGATCCATAGAAGTTTCCTCTGGTGGACTCATTGGGAACAATGGAATGGGTCACTTGGATGGAACGGATGCAGACTCAGGAACTTCAAATGAAATCGACGTTACTCGAGCATTGCGCAGATTGGAGGAGCAGTTAAGTTTGAATGAGGACAGCTTTCAAGAAATCACTTCCTTCTGCAATGAGCATGAAACTGCACATGATTCAAATCCTCAACAAAATCTAGGGTTGACCTGCAAGCAAGAGGAATCTGCAGTTTTCCCAGGACCAGATGATCATGGACTGGTGTATGATGGATATAATGGAAGGCAAGGCCATGCTTACCCTGATGGAAATGAGAAGGGTTTATATTGGACGGAGGTGCTGGAATCATGTAAGTCTTCATCCGTGCCCAAGTTACCACAGAAAAATGTTTACATGCCAGCTGGAAATGAAAGTTCACCATCTTATCCAAGAAGGGAGCCAATTTGCAACCAGGAAAACAGTCACTGGCCAAACTTCAACAGTTATGATGCAGAAAACTCTGTTTTCTCGCTACCTCAACATGATAGTGGAGTCAAATTTCCTCAATATTCTTCTATGTTAGAGACACAAGGGACTAATTCTGACTACTATGCAGCATTGTTTGACCAAAGCCTGGATGCAGATTCAAGCTTGACTGTTGCACAAAAACAGAAATTTACTATTAAGGCAGTCTCCCCAGAATGGGGCTATGCCACTGAGACCACAAAGGTCATCATTATTGGGTCTTTTCTGTGTCATCCCTCGGGTTCTTCCTGGGCTTGTATGTTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATCTGTTGTGAAGCTCCACCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGAGAGTCCTGCAGTGAAGTCAGAGAGTTTGAGTATCGTAACAAGACAAGTAGCTGTACCCGCTGTAGCTCATTGGAAACTGAAGCCACCAGAAGTCCAGAAGAGCTGTTGTTACTTGTTAGATTTGGGCAGATGCTCCTTTCTGATTCCACTGCAAAAAATGATAGCATGGAATCTGGAAGTCATCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTGGGCAGTGGAACTTCATCTGGTATTATTGATTGGCTTCTTGAAGAGCTTCTTAAGAATAAACTGCAGCTGTGGCTTTCTTGCAGATCCCAGGAAAAAGATGAAATAACAGGCTGTTCTTTGTCAAAGAAAGAGCAGGGAATTATTCACATGGTTGCTGGGTTGGGTTTCGAGTGGGCTTTGAACCCTATCCTCAGTTGCGGTGTGAACATAAATTTCCGTGACATCAGTGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCTTCACTTGTAGCTTCTGGTGCATTTGCGGGAGCAGTGACAGATCCAAGTGCACATGATCCAATAGGTAAAACTGCTGCATCTGTTGCAGCCAGCAGTGGGCATAAGGGACTGGCTGGATATCTCTCAGAGCTAGCTCTAACAAGCCATCTGTCATCCCTCACACTGGAAGAGAGTGAGCTATCCAAAAGTTCTGCGGAGCTTGAAGCAGATTTAGCTGTTAGTAGTGTCTCCACGGAAAATCTTGGAGTCACTGATGATCAGGCTTCACTCAAAGATACCTTGGCTGCTATAAGAAATGCAACTCAGGCTGCTGCACGGATACAATCTGCTTTTCGTTCCCATTCTTTTAGAAAACGGAGATCAAGAGAAGCAGCAGCTGCTACTGCTGGTGGTATCAGTGCAGGTACCATTGGCAACATGCCTGAGCTTTCTGCTATGTCAAGACTTGCCTTTCGGAACCCTCGTGATTACAATTCTGCTGCCCTATCAATTCAAAAGAAATATCGAGGTTGGAAAAGTCGCAAAGATTTCTTAGAATTGCGCCAAAAAGTAGTGAAGATACAGGCACATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTAATATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTACGATGGCGGAGAAAAGGAGTTGGTTTACGAGGCTTCCGACAAGAGATGGAGAGAATGGCTGAAAACGAAGATGAAGATATTCTCAAGGTTTTCCGCAAACAGAAAGTTGATGCAGAAATCGAAGAGGCTGTTTCAAGGGTGCTGTCCATGGTCGATTCCCCTGATGCTCGTCAGCAATACCATCGTATGCTTGAGAAATATCGCCAAGCTAAGGCTGAACTTGCAGGGAATGAAGAAGCATCGTCATCAACTCCAATCGGGGATGCTTTCAATATGGAAGATGATCTGTTTCAATTTCCTTGGGAGTAA 2916 0.4455 MSPAGDEYDIDDLFREAQTRWLKPAEVMYILQNHEKYQFTQEPPQKPTSGSLFLFNRRVLRFFRRDGHNWRKKKDGRTVGEAHERLKVGNVEALNCYYAHGEQKSTFQRRSYWMLNPEYEHIVLVHYRETSEGKSNSGPGTQLSPDPSAFIQSPSSYSTQNPPSTSVLSDPYEPTQSFSSPGSIEVSSGGLIGNNGMGHLDGTDADSGTSNEIDVTRALRRLEEQLSLNEDSFQEITSFCNEHETAHDSNPQQNLGLTCKQEESAVFPGPDDHGLVYDGYNGRQGHAYPDGNEKGLYWTEVLESCKSSSVPKLPQKNVYMPAGNESSPSYPRREPICNQENSHWPNFNSYDAENSVFSLPQHDSGVKFPQYSSMLETQGTNSDYYAALFDQSLDADSSLTVAQKQKFTIKAVSPEWGYATETTKVIIIGSFLCHPSGSSWACMFGDVEVPVEIIQDGVICCEAPPHLPGKVTLCITSGNRESCSEVREFEYRNKTSSCTRCSSLETEATRSPEELLLLVRFGQMLLSDSTAKNDSMESGSHLIKQKADDDSWSHIIEALLVGSGTSSGIIDWLLEELLKNKLQLWLSCRSQEKDEITGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDISGWTALHWAARFGREKMVASLVASGAFAGAVTDPSAHDPIGKTAASVAASSGHKGLAGYLSELALTSHLSSLTLEESELSKSSAELEADLAVSSVSTENLGVTDDQASLKDTLAAIRNATQAAARIQSAFRSHSFRKRRSREAAAATAGGISAGTIGNMPELSAMSRLAFRNPRDYNSAALSIQKKYRGWKSRKDFLELRQKVVKIQAHVRGYQVRKHYKVIWAVGILDKVVLRWRRKGVGLRGFRQEMERMAENEDEDILKVFRKQKVDAEIEEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELAGNEEASSSTPIGDAFNMEDDLFQFPWE* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2038 971 Gene3D - 812 860 - -
Dod04g2038 971 ProSiteProfiles CG-1 DNA-binding domain profile. 10 136 IPR005559 GO:0003677
Dod04g2038 971 ProSiteProfiles Ankyrin repeat profile. 637 669 IPR002110 GO:0005515
Dod04g2038 971 MobiDBLite consensus disorder prediction 130 209 - -
Dod04g2038 971 PANTHER CALMODULIN-BINDING PROTEIN 5 968 - -
Dod04g2038 971 SMART iq_5 754 776 IPR000048 GO:0005515
Dod04g2038 971 SMART iq_5 811 833 IPR000048 GO:0005515
Dod04g2038 971 SMART iq_5 834 856 IPR000048 GO:0005515
Dod04g2038 971 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 968 - -
Dod04g2038 971 Gene3D Immunoglobulins 402 497 IPR013783 -
Dod04g2038 971 ProSiteProfiles IQ motif profile. 812 841 IPR000048 GO:0005515
Dod04g2038 971 ProSiteProfiles Ankyrin repeat region circular profile. 637 662 - -
Dod04g2038 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 802 858 IPR027417 -
Dod04g2038 971 MobiDBLite consensus disorder prediction 130 190 - -
Dod04g2038 971 Gene3D - 513 701 IPR036770 -
Dod04g2038 971 SUPERFAMILY Ankyrin repeat 605 698 IPR036770 -
Dod04g2038 971 SMART CG_1_2 13 131 IPR005559 GO:0003677
Dod04g2038 971 ProSiteProfiles IQ motif profile. 755 784 IPR000048 GO:0005515
Dod04g2038 971 Pfam IQ calmodulin-binding motif 814 832 IPR000048 GO:0005515
Dod04g2038 971 Pfam IQ calmodulin-binding motif 837 856 IPR000048 GO:0005515
Dod04g2038 971 SUPERFAMILY E set domains 408 492 IPR014756 -
Dod04g2038 971 ProSiteProfiles IQ motif profile. 835 860 IPR000048 GO:0005515
Dod04g2038 971 Pfam CG-1 domain 16 129 IPR005559 GO:0003677
Dod04g2038 971 Pfam Ankyrin repeats (3 copies) 619 697 IPR002110 GO:0005515
Dod04g2038 971 Pfam IPT/TIG domain 408 491 IPR002909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2038 Dod-Chr4 43878139 43888143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2038 7 969 CAMTA Transcription Factor Family AT1G67310 51.660 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Dod04g2038 CG-1 7.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2038 K21596 - gmx:100786880 1431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0638 04 9390220 9396442 Dod04g2038 04 43878139 43888143 PCT