Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2018 ATGATGGATGCTGTTGAGGTTGAAGAAAATCTGTTTGCAGCAAGTGATGCCAAGCTACATGGAGAAATGTGCAAGGCGCTTTCCCTAATATATTGCAAAGTGTTGTCAGTATTTCCTTCTTTAGAAGCAGCTAGGCCTCGGAGCAAATCCGGAATCCAAGCATTATGTTCACTGCATGTAGCCTTAGAGAAGGCTAAGAATGTTCTTCGGCACTGTTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAGGGCTAAATGTGCTCTCAAAGAGAGTCTTAAACGGGTGGAAGATATTGTTCCGCAATCTATTGGCTGTCAGATTCAGGAGATTTTGAATGAACTTGCAAGTATGTCGTTTGCACTTGACCCATCAGAGAAGCAAGTTGGAAATGATTTAATTGCATTGCTTCAGCAGGGGAGAAATTTTAACGACTCTAATGACAGCAATGAACTTGAATCTTTTCATCAGGCAGCTACTAGACTTAGAATTACATCTTCTAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTCATAGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTTCATCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAGTTCTCCGATGACAACGACTCTCAGGGTTCTGCGCCTTGTTCTCCCACTATTCAGGGATCTATTGAGGATGGTGTACCTGGTGCTCATTGTCAGGCCTTTGACAGACAGCTTTCAAAACTTAGTTTGTTTAATTTTAGGCCAAATGATACGATATCAGGGCAGATGCCCCTTCCACCTGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGTATGATCCGGTTATAATTGCTTCTGGGCAAACATATGAAAGGGAATGCATAGAGAAATGGTTCAGTGATGGGCACAACACCTGCCCAAAGACCCAACAGAAACTTTCACATCTTTGTCTGACTCCTAATTACTGTGTCAAGGGTCTTGTTGCTAGTTGGTGCGAACAGAATGGAGTTCCTATTCCTGAAGGTCCTCCTGAATCTCTTGATCTTGACTATTGGAGATTGGCACTATCAGAGTCTGAATCTACAAACTCAAGATCTGTAAACAGTGTCAGCTCTTGCAAGTTGAACAGTGTCAAAGTGGTTCCTTTAGAAGAAAGTGGTATCTCTGAGGAAACGGGGGAAAATGGAACTGAAAGTATGTCTACACTAGAGGAAGATACTGAGCAGTATTTAAGTCTTTTGAAGGTCATGACTGAGGGTAACAATTGGAAGAGGAAATGTAAAGTTGTAGAACAATTAAGGCTGTTGCTGAAGGATGATGAAGAAACCAGGATGTTTATGGGGGCTAATGGCTTTGTTGAAGCACTTTTACAGTTTTTGCAATCAGCTGTGCGTGAAGAAAATTTGATGGCCCAGGAAAATGGAGCAATGGCTCTCTTCAACCTGGCTGTAAATAACAAAAGAAATAAGGAAATGATGTTATCGGCAGGAGTATTATCATTGTTGGAGGAAATGATTTCTAACACTAGTTCTTATGGTTGTGCAACCGCCCTATATGTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCAGTCCAGTTCCTGATCCAGCTTCTTCAAGATGACACTGATGTTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTTTGCCTGCCAATATTCCATACCTCCTTTCATCTGGCATCATTAATGGCCTACAATCCCTTCTTCTAGCCCAGGGTGATTGCATTTGGACAGAAAAATGCATAGCAGTTTTGATAAATTTGGCTTCTTCTCAGGTCGGAAGGGAGGAAATGGTATCAACTCCTGCACTCATAAGCGCATTGGCCTCGATATTGGACACTGGTGAGCTCCTAGAGCAGGAGCAAGCTGTCTCTTGTCTCCTGATTTTGTGTAACAGGAGTGAGACATGTAGTGAGATGCTGCTGCAAGAAGGGGTTATACCGGCATTGGTTTCAATATCAGCGAATGGGACCCCGAGAGGTATAGAAAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAGCAGCGGCAACGAGGCCATTCGCCAGTGGAGGCACATCAGGGCTCTACTGAAACTGGTGATTTGTCTCCGCAGCCTGCTGAAATGAAGCCGCAATGCAAGTCTATGCCTAGAAGGAAGTCGAGGAAGGCTTTGAGCTTTTTGTGGAAAAGCAAGGGCTATTCTGTCTACCAGTGTTAA 2298 0.4295 MMDAVEVEENLFAASDAKLHGEMCKALSLIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSECSKLYLAITGDSVLLKFERAKCALKESLKRVEDIVPQSIGCQIQEILNELASMSFALDPSEKQVGNDLIALLQQGRNFNDSNDSNELESFHQAATRLRITSSRAALAERRALKKLIERARAEEDKRKESIIAYLFHLMRKYSKLFRSEFSDDNDSQGSAPCSPTIQGSIEDGVPGAHCQAFDRQLSKLSLFNFRPNDTISGQMPLPPEELRCPISLQLMYDPVIIASGQTYERECIEKWFSDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLDYWRLALSESESTNSRSVNSVSSCKLNSVKVVPLEESGISEETGENGTESMSTLEEDTEQYLSLLKVMTEGNNWKRKCKVVEQLRLLLKDDEETRMFMGANGFVEALLQFLQSAVREENLMAQENGAMALFNLAVNNKRNKEMMLSAGVLSLLEEMISNTSSYGCATALYVNLSCLEEAKPMIGMSQAVQFLIQLLQDDTDVQCKQDSLHALYNLSTLPANIPYLLSSGIINGLQSLLLAQGDCIWTEKCIAVLINLASSQVGREEMVSTPALISALASILDTGELLEQEQAVSCLLILCNRSETCSEMLLQEGVIPALVSISANGTPRGIEKAQKLLMLFREQRQRGHSPVEAHQGSTETGDLSPQPAEMKPQCKSMPRRKSRKALSFLWKSKGYSVYQC* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2018 765 Gene3D - 399 712 IPR011989 -
Dod04g2018 765 SMART arm_5 455 499 IPR000225 GO:0005515
Dod04g2018 765 SMART arm_5 500 539 IPR000225 GO:0005515
Dod04g2018 765 SMART arm_5 540 581 IPR000225 GO:0005515
Dod04g2018 765 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 749 - -
Dod04g2018 765 SUPERFAMILY RING/U-box 272 355 - -
Dod04g2018 765 SUPERFAMILY ARM repeat 428 705 IPR016024 -
Dod04g2018 765 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Dod04g2018 765 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Dod04g2018 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Dod04g2018 765 MobiDBLite consensus disorder prediction 712 742 - -
Dod04g2018 765 CDD RING-Ubox_PUB 284 326 IPR045210 -
Dod04g2018 765 Coils Coil 176 196 - -
Dod04g2018 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Dod04g2018 765 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Dod04g2018 765 PANTHER U BOX DOMAIN-CONTAINING 2 749 - -
Dod04g2018 765 MobiDBLite consensus disorder prediction 715 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2018 Dod-Chr4 43602012 43609551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2018 2 765 U-box Gene Family AT1G27910 67.522 0.0 1022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2018 - - gmx:100794099 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0603 04 8675801 8677276 Dod04g2018 04 43602012 43609551 PCT