Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g2010 ATGGAGTCCGATTCAGACTCCGACGGATCCCATGTCTCTGCAACTCCTCCTCGGCGATCAACTCCATCACCATCACCACCACCACCTCTTCTAGTTTCCCGTAAATCCAGAATCAGAATCAAACCCTCCTCTAAACCCTCAATCTCCCAAACACGCCCTTCCGAACCCGAACCAGCCCAGCAAGACCCTTTCTCCCTCTCCTCTACTGCTCTGCCGTTCCAAATTCGGCGGACCTCCGATTGCGTCCCCGCGCCGTCGACTTCTCAGCCCATCGAAACCCTACCCGCTGGGTTCTTCTCCAAATCCGCCTCCTTCTCGAAGATTCGGAGGCCATTCGTAGATTTCGAAGCTTCTAGAAACGAACCGGTTCTCAGTTCTTCCTCCAACAATGTTGAAATTGACGAGGTCGAAGAAGGTCTTGGACTTCGTGGTGCTCGAGGATCGGGGAAATCGGGGAAGAGGCATCACCACCCTAACCTGATAGGTGCTAATGCGCCATTGCCGGCCGTGAAGTTGCGAAAATGCGGCGGGGAAGGGAACTTCGTGAAGTTGAACATGAGTGGGAAGAGGAAGAAGTTTTTGAACAAAGGGTGGAAGAAGAACGGGAAAGTTTCCGGTGGTAGAAGGTACAGGAGAACAAGTAAAGGTAAATTGGGACATCAAGGGAAGGAGGAGGATCAAGATGAACACGGTTTTGATGGCGAAGAGTTGGTTGCAGAGAGTGGGAAGAAGAAGCCAAATGGTACTTGTAGAGCAAGAGAGATTGATTGCAAGTCGATGGAAGAGGCGGTTTCGGCGGCCCGGGAAGAACCTTCTGATGAGAATTTGGTGAATTTGCTGAGATTGGTTTATGGGTATGATTCTTTCAGAGAGGGGCAGCTGGAGGCGATCAAGATGGTGCTTGATGGGAAGTCTACTATGCTTATTTTGCCGACTGGCTCAGGGAAGTCACTGTGTTATCAATTGCCTGCTTTGATTTTGCCTGGGATTACCCTTGTTGTTAGTCCATTGGTGGCCTTGATGATTGACCAGCTAAGGCAATTGCCTCCTGTGATTAAGGGTGGTCTTCTAAGCAGTAGTCAGACACCTGAAGAAGCAGAAGAATCGCTCAACCAGATTCGACAAGGTGCAACGAAGGTGCTTTTCGTTTCACCAGAGCGGTTCCTGAATGAAAAGTTTCTTTCTGTTATTTCTGGTATGTCAGACATCTCACTTGTTGTTGTTGACGAAGCGCATTGTATTTCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCCTCTTTGCTTTGTAAAAAGCTCAATGTAGGTGCTATTCTTGCAATGACAGCAACCGCTACAACCACAACTTTAGATGCCATCATGGCTGCTCTAGATATTCCTTCCACGAATCTTATTAAGAAGGCACAACTAAGGGACAATTTTCATTTATCGGTGTCGTTGGTTAAAAATAGAATGAAAGACCTTCTGAGTCTGATCAAGTCTTCTCCATTTGCTGAAGTTCAAAGCATGATTATATACTGCAAATTTCAGTCTGAAACTGATATAGTAAGCAGATACTTGAACGATAAAAATATCTTGGCAAAGAGTTATCATAGTGGTCTCACTGCAAAGGAACGTAGCTATGTACAGGAGTTGTTTACTTCCAACAAGATCAGAGTGGTTGTTGCAACAGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCTGTAATCCATTACAGTTTGCCTGAAAGTTTGGAGGAGTATGTGCAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTATTGCCATTTGTTTTATGATGATGACACATATTTCAAACTTCGTAGTCTAATGCACAGTGAAGGAGTAGATGAATATGCAGTGAACAAATTTCTGCGCGAAGTGTTTCCTGTTGAGAAGGACTCCCGCTGGAAAATATGTTCATTAATCAAAGAATCTGCTTCGCGCAAGTTTGATATGAAAGAAGAGGTGATGCTTACACTTTTTACACGGTTGGAGTTGGGAGATGTGCAGTACTTGCATCTACTGCCACAGATACATGCAACTTGCTCTTTGACATTTCATAAGACTTCCCCTCCTATGCTTGCACAAAGAGAGTCTGCTGTCGCTGTAATTCTAAAAAGGTCTGAAAATAAGCAAGGGCTGTATGTTTTTGACATTCCAACTGTGGCAAATGACATGGGGGTTACAGCAGTTGAATTAACAGATCAGTTATACAATCTGAAGTTGACAGGAGAAATAACTTATGAAATGAAGGAGATGGCCTACTGTTATAGGATTGTTGAAGTCCCAACGGACTTTTTTTTGCTATCAGCTGATATTACCCGATGGTTGTCTGAAGTTGAAAGTTGTAAGGTACGGAAAATGGACGCAATGTTTAATGCTGCATATTTCACAGTAAATTTATGTGACAAGATGCAAGGTTGCAATGGTGCTGATCACACACCATGCTTGCAAAGAAGAATATTGGATTACTTTGCTGGAGTTGATAGCAATTATTCCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACATGCTCGATTTACACCAAGAGCCATTGCGAGGATAATGCATGGAATTGCAAGCCCAGCGTATCCTTCTACAACTTGGCGTACAGCTCATTTCTGGGGAAGGTATACGCATGTAGACTTTCAGGTGGTGATGGAAGCAGCAAAGGCAGAACTTACAAATTGTGTCGGAAAAGATATGCTCTAG 2781 0.4459 MESDSDSDGSHVSATPPRRSTPSPSPPPPLLVSRKSRIRIKPSSKPSISQTRPSEPEPAQQDPFSLSSTALPFQIRRTSDCVPAPSTSQPIETLPAGFFSKSASFSKIRRPFVDFEASRNEPVLSSSSNNVEIDEVEEGLGLRGARGSGKSGKRHHHPNLIGANAPLPAVKLRKCGGEGNFVKLNMSGKRKKFLNKGWKKNGKVSGGRRYRRTSKGKLGHQGKEEDQDEHGFDGEELVAESGKKKPNGTCRAREIDCKSMEEAVSAAREEPSDENLVNLLRLVYGYDSFREGQLEAIKMVLDGKSTMLILPTGSGKSLCYQLPALILPGITLVVSPLVALMIDQLRQLPPVIKGGLLSSSQTPEEAEESLNQIRQGATKVLFVSPERFLNEKFLSVISGMSDISLVVVDEAHCISEWSHNFRPSFMRLRASLLCKKLNVGAILAMTATATTTTLDAIMAALDIPSTNLIKKAQLRDNFHLSVSLVKNRMKDLLSLIKSSPFAEVQSMIIYCKFQSETDIVSRYLNDKNILAKSYHSGLTAKERSYVQELFTSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDDTYFKLRSLMHSEGVDEYAVNKFLREVFPVEKDSRWKICSLIKESASRKFDMKEEVMLTLFTRLELGDVQYLHLLPQIHATCSLTFHKTSPPMLAQRESAVAVILKRSENKQGLYVFDIPTVANDMGVTAVELTDQLYNLKLTGEITYEMKEMAYCYRIVEVPTDFFLLSADITRWLSEVESCKVRKMDAMFNAAYFTVNLCDKMQGCNGADHTPCLQRRILDYFAGVDSNYSCKKIGQSSPFLRADIKVFLQSNSHARFTPRAIARIMHGIASPAYPSTTWRTAHFWGRYTHVDFQVVMEAAKAELTNCVGKDML* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g2010 926 MobiDBLite consensus disorder prediction 1 94 - -
Dod04g2010 926 PANTHER DNA HELICASE RECQ FAMILY MEMBER 51 848 - -
Dod04g2010 926 Pfam Helicase conserved C-terminal domain 503 598 IPR001650 -
Dod04g2010 926 SMART helicmild6 518 599 IPR001650 -
Dod04g2010 926 SMART ultradead3 285 481 IPR014001 -
Dod04g2010 926 CDD DEXHc_RecQ4-like 277 470 - -
Dod04g2010 926 MobiDBLite consensus disorder prediction 197 232 - -
Dod04g2010 926 Pfam DEAD/DEAH box helicase 292 453 IPR011545 GO:0003676|GO:0005524
Dod04g2010 926 MobiDBLite consensus disorder prediction 42 94 - -
Dod04g2010 926 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 404 413 IPR002464 -
Dod04g2010 926 MobiDBLite consensus disorder prediction 217 232 - -
Dod04g2010 926 MobiDBLite consensus disorder prediction 140 162 - -
Dod04g2010 926 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 279 627 IPR004589 GO:0004386|GO:0006310
Dod04g2010 926 CDD SF2_C_RecQ 475 608 - -
Dod04g2010 926 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 297 467 IPR014001 -
Dod04g2010 926 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 488 645 IPR001650 -
Dod04g2010 926 PANTHER ATP-DEPENDENT DNA HELICASE Q4 51 848 - -
Dod04g2010 926 Gene3D - 475 666 IPR027417 -
Dod04g2010 926 MobiDBLite consensus disorder prediction 197 216 - -
Dod04g2010 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 618 IPR027417 -
Dod04g2010 926 Gene3D - 258 467 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g2010 Dod-Chr4 43537915 43545793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g2010 504 631 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 3.06e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g2010 K10730 - gmx:100811214 1250.73