Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1993 ATGGATAATGGTTGCTTCCCTTGTACACGTCGTGACGCTTTTCCAGCTGGGCTGAGAGTTCTGGTTGTTGATGATGATCTAACATGGCTGAGGATCCTTGAAAAAATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTGGTTTAGCAACAGAGGCTCTAAAGAAGCTTCGTGAGAGGAAAAATGGATATGACATAGTGATCAGCGATGTAAACATGCCTGACATGAATGGTTTCAAGCTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAGCATGGAGCATGTGATTATCTACTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAACATGTCTTGAGAAAAAGGATACATGAGGCAAGAGAATTTGAGAGTCATGAAGGTTATGAGGGCATTCACTTGATGATAAATGGGTCAGATCAGTCTGATGAGGCGTGCCTGTTTGCTCTAGAAGATATCAGCTCAACTAAGAAAAGAAAAGATATCGGTGACAAACATGACGACAAGGAATCTGGAGATCCATCTTCCACAAAGAAAGCTAGAGTAGTTTGGTCCGTGGATCTTCACCAGAAATTTGTCCAAGCAGTGAATCAGATTGGACTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCATGGCTGACTAGAGAAAACGTTGCTAGTCACTTACAGAAATACCGGCTCTACTTGAGCAGGTTGCAGAAGGAAAAAGATCATAAATCTTCCTCAAGTGGAATAAAGCATTCGGCTTCCCCTTCAAAAGATCCAAGGAGCTTTAGTCTTCAGAACACTATAAACAAGGAACAAAATGACGTTGCAATTGATAGCTTCAGATGTCCAGATAGAACGGTACAATTTCAGAATGTGGATGCTACAACTGACGAAGAAACAGAAAAAAGAAGAGCTTTGACTGGTAGCACTCCTGATCCAATGATAAGAAATAGTTCACAGCTGGGCCTTGATAAGCCTTTTGCACCTCACAAGTCAGAAGGAAACCATGCAGTATTTGATTGCACCAAACCAACACAGTACTTGTGGAGTGAAGCTCCAAAGAGGAATCTCAAAGAACAACAGAAATCACTTGTTCAGTTAGAAGATAGCTTCAGCCAGTTGCCATTACATGGTACACAGAACCACATCCAGGTTGATCAATCACAATCAATTCCTTCAGTTAACTCCAATCCCTCTATAACAGAAGAAAAGGCTACTGCCGGTTTCGAAACCAAAACTTTATATGCTGACTACAGATGGGATTGCCTCAGTTCTGCAAGTTCAATAGGATCTGCAGTTAACACCATTCCTATTCAGTCCAAAAGCCTTATGATGAATGATCAATATGCAGAGCCCATTTTCACTTCAAATTTGGGCTTGAACATTTCCGATATTGAAATTTACCAGAGAAACCTGCTCTTTGGAGGGGAGGCACATTCTGCACCTTTGGAGGAGGACTTGCATTTCTTCTTGCTACAAGCTGAATGCTATAACATGAACTTCGGTCTGCAGAATATGGGGATGTCTGAGTACTATGATCCAGGGCTTACTGCTGAATTTCCAGCCTATCCATATGATTCAGCAGATTATTCAGTGGTAGATCAAAGTCTATTCATAGCATGA 1689 0.4127 MDNGCFPCTRRDAFPAGLRVLVVDDDLTWLRILEKMLKKCSYEVTTCGLATEALKKLRERKNGYDIVISDVNMPDMNGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAREFESHEGYEGIHLMINGSDQSDEACLFALEDISSTKKRKDIGDKHDDKESGDPSSTKKARVVWSVDLHQKFVQAVNQIGLDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKEKDHKSSSSGIKHSASPSKDPRSFSLQNTINKEQNDVAIDSFRCPDRTVQFQNVDATTDEETEKRRALTGSTPDPMIRNSSQLGLDKPFAPHKSEGNHAVFDCTKPTQYLWSEAPKRNLKEQQKSLVQLEDSFSQLPLHGTQNHIQVDQSQSIPSVNSNPSITEEKATAGFETKTLYADYRWDCLSSASSIGSAVNTIPIQSKSLMMNDQYAEPIFTSNLGLNISDIEIYQRNLLFGGEAHSAPLEEDLHFFLLQAECYNMNFGLQNMGMSEYYDPGLTAEFPAYPYDSADYSVVDQSLFIA* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1993 562 SUPERFAMILY CheY-like 17 144 IPR011006 -
Dod04g1993 562 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Dod04g1993 562 CDD REC_typeB_ARR-like 20 134 - -
Dod04g1993 562 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Dod04g1993 562 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Dod04g1993 562 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Dod04g1993 562 MobiDBLite consensus disorder prediction 314 340 - -
Dod04g1993 562 Gene3D - 196 259 - -
Dod04g1993 562 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 537 - -
Dod04g1993 562 MobiDBLite consensus disorder prediction 180 197 - -
Dod04g1993 562 MobiDBLite consensus disorder prediction 262 285 - -
Dod04g1993 562 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Dod04g1993 562 SMART REC_2 18 130 IPR001789 GO:0000160
Dod04g1993 562 MobiDBLite consensus disorder prediction 180 200 - -
Dod04g1993 562 MobiDBLite consensus disorder prediction 270 285 - -
Dod04g1993 562 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 537 IPR045279 GO:0009736
Dod04g1993 562 Gene3D - 18 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1993 Dod-Chr4 43391963 43395850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1993 12 258 Response Regulator Gene Family AT2G25180 55.469 5.21e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dod04g1993 Response_reg 2.7e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1993 - K14491 gmx:100778324 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g0560 04 7991852 7996622 Dod04g1993 04 43391963 43395850 PCT