Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1989 ATGGGCCGCCGCAAGATCGAGATCAAGATGGTGAAGGACACCAACACGAGGCAGGTGACTTTCTCGAAGCGTCGTACTGGTCTGTTCAAGAAAGCCAACGAGTTGTCGATCCTGTGCGGTGCCGAGGTTGCTATTGTCGTGTTCTCCCCAGGGAACAAGCCTTACTCCTTCGGACACCCCGGTGTTGATGCCGTCGCTGCGAAGTACCTCATCGACCCGGATGAGGAAGCAGACCCCGATGCTGATGCTGATGCTGTTGTTGTTGCTGCTGCTGCTGATGCGGATGGTGATGGTGATGGTGGTGACCATGATGATGAAGAAGGTGGTGGTTGTGGTGGTGGAAGCGCCTCTTCAGGAGATGATGAATCTGATGATCATGTTGCTGATGATGATCACGTGGAGAGGCTTAACAAGATGCTTGCGGAGGTGATGGAGCAGGTGCGTGAGGCCGAGAAGGAGGCTGCGGCGTGTGACGAGGAACTGGGACTGCGCATGGCACTGACAGGGCGCGATGAGTTTCAGGGACTGCGTGATGCTCATGTTGGGTTGAAGGGTCTTGTCAAGGAGCGTCTTGGTCTTTTGGAGGCTGTGGAAGCCTTGTTGCTTCTTGCTGAGAAGCCCGTGGTGGGAATACCCAAGAAGAGAAGAAGAACCAATTGA 660 0.547 MGRRKIEIKMVKDTNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDAVAAKYLIDPDEEADPDADADAVVVAAAADADGDGDGGDHDDEEGGGCGGGSASSGDDESDDHVADDDHVERLNKMLAEVMEQVREAEKEAAACDEELGLRMALTGRDEFQGLRDAHVGLKGLVKERLGLLEAVEALLLLAEKPVVGIPKKRRRTN* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1989 219 Coils Coil 133 160 - -
Dod04g1989 219 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Dod04g1989 219 MobiDBLite consensus disorder prediction 93 127 - -
Dod04g1989 219 SUPERFAMILY SRF-like 1 70 IPR036879 GO:0003677|GO:0046983
Dod04g1989 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod04g1989 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Dod04g1989 219 PANTHER MADS BOX PROTEIN 2 214 - -
Dod04g1989 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 214 - -
Dod04g1989 219 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Dod04g1989 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod04g1989 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod04g1989 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod04g1989 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1989 Dod-Chr4 43324410 43325235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1989 1 74 Type I MADS-box Gene Family AT2G34440 66.216 9.41e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod04g1989 SRF-TF 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1989 - - mtr:MTR_4g131030 146.362