Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1984 ATGTCATTGGGATGGTTGTTTGCAGCAGAAAAGCGCGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTTGGAAGCCGCGTGGTCTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCAACCAACAGGGAAGTGGATGCCCAAATCCCTAACTATCCAAGCTTGCCTCCCCAACTCATTTGTCAACTTCATAATGTGACTATGCAAGCTGATACCGAGACAGATGAAGTATATGCACAGATGACCTTGCAACCTCTAAATCCTCAAGAGCAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAACTTTGACAGCCAGTGACACAAGCACTCATGGGGGGTTCTCTGTTCCTCGCCGGGCAGCCGAAAAAGTGTTTCCTCCATTGGACTTCTCCCAACAGCCTCCTGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTTCGTGGCCAGCCCAAGAGGCATCTACTGACCACAGGATGGAGTGTCTTTGTGAGTGCAAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAATTGCTTCTTGGCATTCGGCATGCTAATCGACCACTACCGGTGATGCATTCATCAGTGTTGTCCAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGCTTCACCATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTCATACCCTTAGCAAAGTATGTTAAAGCTGTTTATCATACTCGAGTTTCAGTTGGCATGCGTTTCAGAATGCTGTTTGAAACAGAGGAATCTAGTGTGCGACGCTACATGGGCACAATAACTGGCATCAGTGACTTGGATCCAGTTCGGTGGCCAAATTCACATTGGCGTTCAGTCAAGGTTGGTTGGGATGAGTCCACTGCAGGAGATAAGCAACCTCGAGCCTCTCTATGGGAAATTGAGCCATTAACAACTTTTCCAATGTATCCATCTCCATTCCCTCTTAGGCTTAAAAGACCATGGCCTTCAGGACTTCCTTCATTCCATGGATTGAAGGATGATGATTTTGGGATAAATTCTTCACTATTGTGGCTTAGAGATGCAGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGCCTTGGTGTTAGTCCTTGGATGCGACCGAGGCTTGATCCTGCTATGGTGAATTTGCAAACAGATATGTACCAAGCCATGGCTGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCCAAACAGTATCCTGCTTCTTTACTTCAATTTCAGCAACCCCAGATCATCCCTAATCAGACTGGTGCTTTAATGCAAACCCAGATGTTGCAGCAATCTCAACCTCAACAGGCCTTTCCAAATAATCAAGAAAATCATCATCCATCTCAATCACAGCCTCAAATTCAAACTCAGACACATCTTCATCAGCATCTACAGAATCAGCACTTATTCAACAATCAGAATCATCATCAGTCACAGCAACAACAGCATCCACAACAGCAACAACAGCACCCGCAACAGCAACAGCAGCAGTTGGTAGATCATCAGCAGATTTCAAGTGCTGTCTCAACAATGTCTCAGTTTGTTTCAGCGCCTCAATCTCAATCACCATCTGTGCAAGCTATCTCTTCACTGTGCCATCAGCAAAGTTTTTCAGATTCAAATGGCATTCCTGTGGCCACTGCTGTTGTTTCTCCGCTGCAGAGTATGTTGGGTTCATTTCCGCAGGATGAAGCATCCCACCTTCTTAACCTTCCTAGGACAAGCACTTGGGTTCCTGTTCAATCTTCAACTCGTGTTGCAGTGGATCGTCTTCTTTCTTCTGGAGCATCTCAATGTGTTCTGCCTCAGGTGGAGCAGCTGGGGCAGCCACAGAGTACTATGTCTCACAATGCTATTACATTGCCACCATTTCCTGGTAGGGAGTGTACAATAGAAGGGAGCAATGATCCTCAGAACCATCTATTGTTTGGTGTTAATATAGAACCCTCATCACTTCTAATGCATCATGGCATGTCAAACCTTAAAGGAGTTAGCAGCAACAGTGACTCATCAACCGTACCTTTTCAACCTTCTAATTACCTGAATACCACAGGTACTGATTCTTCATTGAATCCTGGAATGGTACACAACAATGGTGAATCATGCTTCCTGCATACTCCCGAAAATGGGGACCTAGGAAACCCACCAACTAAAACCTTTGTGAAGGTTTACAAGTCGGGGTCCTTCGGACGATCATTGGATATCACTAAATTCACTAGCTACCATGAGCTGCGCAGTGAGCTTGCTCGCATGTTCAGCCTTGAAGGTGAGTTGGAGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTTGTGGACCGAGAGAATGACGTTCTTCTCCTTGGCGATGGCCCCTGGCCGGAATTTGTAAATAGTGTATGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGAAAATGGGCAACAATGGCCTTGGCCTTCTAAACTCTGTTCCAATTCAGAGGCTTTCAAATGGCATCTGTGATGACTACACAGGAGGAGGCCGTGAGGACCCAAGAAATTTAAGCACTGGGATGACCACTGTGGGGTCATTAGACTTCTGA 2709 0.4581 MSLGWLFAAEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDAQIPNYPSLPPQLICQLHNVTMQADTETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHANRPLPVMHSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDKQPRASLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFHGLKDDDFGINSSLLWLRDADRGLQSLNFQGLGVSPWMRPRLDPAMVNLQTDMYQAMAAAALQDMRTLDPSKQYPASLLQFQQPQIIPNQTGALMQTQMLQQSQPQQAFPNNQENHHPSQSQPQIQTQTHLHQHLQNQHLFNNQNHHQSQQQQHPQQQQQHPQQQQQQLVDHQQISSAVSTMSQFVSAPQSQSPSVQAISSLCHQQSFSDSNGIPVATAVVSPLQSMLGSFPQDEASHLLNLPRTSTWVPVQSSTRVAVDRLLSSGASQCVLPQVEQLGQPQSTMSHNAITLPPFPGRECTIEGSNDPQNHLLFGVNIEPSSLLMHHGMSNLKGVSSNSDSSTVPFQPSNYLNTTGTDSSLNPGMVHNNGESCFLHTPENGDLGNPPTKTFVKVYKSGSFGRSLDITKFTSYHELRSELARMFSLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQKMGNNGLGLLNSVPIQRLSNGICDDYTGGGREDPRNLSTGMTTVGSLDF* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1984 902 CDD B3_DNA 120 213 IPR003340 GO:0003677
Dod04g1984 902 SUPERFAMILY DNA-binding pseudobarrel domain 106 250 IPR015300 -
Dod04g1984 902 Gene3D - 119 222 IPR015300 -
Dod04g1984 902 SMART B3_2 121 223 IPR003340 GO:0003677
Dod04g1984 902 ProSiteProfiles PB1 domain profile. 767 851 IPR000270 GO:0005515
Dod04g1984 902 Pfam Auxin response factor 247 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod04g1984 902 PANTHER AUXIN RESPONSE FACTOR 8 880 - -
Dod04g1984 902 Gene3D - 764 856 - -
Dod04g1984 902 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Dod04g1984 902 Gene3D - 285 357 - -
Dod04g1984 902 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Dod04g1984 902 MobiDBLite consensus disorder prediction 522 552 - -
Dod04g1984 902 Pfam AUX/IAA family 765 852 IPR033389 -
Dod04g1984 902 MobiDBLite consensus disorder prediction 476 510 - -
Dod04g1984 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 880 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod04g1984 902 SUPERFAMILY CAD & PB1 domains 765 842 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1984 Dod-Chr4 43257029 43263625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1984 9 477 B3 DNA Binding Superfamily AT1G30330 84.746 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod04g1984 AUX_IAA 4.4e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1984 04 43257029 43263625 Dod04g1984 04 43257029 43263625 ECH
Dod04g0479 04 6801589 6810400 Dod04g1984 04 43257029 43263625 PCT