Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1981 ATGAATAATCAAAACCAGCACCAGCGTCAGCCTCTACCTTTGCTAAGCAGCTTCCTTGGTTCAGCTTCACAAGAAGGCTCATTATTACTAAATCAAAATCTTAAAGCATGTCATAGTCAAGTGGAAGATGTCACGGTAGCCTTGCATATAGGCCTCCCTGACAATTCCAATAATGTGTCCAACAATGATAACAATGAATTTATGAACAATGCAGAACCTCATGTTGCTAATAATTACTGGATACCAACTGAAGAACAGATTCTCATTGGTTTTAGTCATTTCTCCTGTCCTGTCTGCCTCAAAACCTTCAATCGCTATAACAACCTTCAGATGCATATGTGGGGGCATGGTTCACAGTATCGAAGAGGACCAGACTCGCTGAAACGAACTCATCCAAGACCCTTGTTAGACATTCCATGCTACTGTTGTTCAAGAGGGTGCAAGAACAACATAGAGCACCCTAGAGCCAAGCCACTCAAGGATTTCCGAACATTGCAAACACACTACAAGAGGAAGCATGGACCAAAGCCCTTCACGTGCCGCAAGTGTGGAAAGTCTTTGGCAGTAAAGGGTGATTGGCGAACCCATGAGAAGAACTGTGGCAAACGCTGGCTTTGTGTTTGTGGCTCAGACTTCAAACATAAGAGGTCGCTTAAGGACCATATCAAAGCATTTGGGTTTGGTCATAGCCCCTTTTCTTCATCATCTGAGGGTATGTGA 720 0.4375 MNNQNQHQRQPLPLLSSFLGSASQEGSLLLNQNLKACHSQVEDVTVALHIGLPDNSNNVSNNDNNEFMNNAEPHVANNYWIPTEEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCSRGCKNNIEHPRAKPLKDFRTLQTHYKRKHGPKPFTCRKCGKSLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGFGHSPFSSSSEGM* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1981 239 Pfam Zinc finger, C2H2 type 94 113 IPR013087 -
Dod04g1981 239 Gene3D Classic Zinc Finger 93 116 - -
Dod04g1981 239 SUPERFAMILY beta-beta-alpha zinc fingers 93 198 IPR036236 -
Dod04g1981 239 SMART c2h2final6 178 198 IPR013087 -
Dod04g1981 239 SMART c2h2final6 94 116 IPR013087 -
Dod04g1981 239 SMART c2h2final6 141 173 IPR013087 -
Dod04g1981 239 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Dod04g1981 239 Gene3D Classic Zinc Finger 156 227 - -
Dod04g1981 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Dod04g1981 239 PANTHER PROTEIN TRANSPARENT TESTA 1-LIKE 9 238 - -
Dod04g1981 239 PANTHER ZINC FINGER PROTEIN WIP2 9 238 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1981 Dod-Chr4 43228676 43230089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1981 44 234 C2H2 Transcription Factor Family AT1G34790 67.805 6.71e-100 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod04g1981 zf-C2H2 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1981 - - gmx:547675 396.741