Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1975 ATGGGGGAAGCAGAGCGACGGAGCGTGCCGGTTCTACCGTGGATGCGAGACCCCGTTGACGTCACTCTCTGCCAAGACCTTCCCCTCGAAACTGTCCCTTCCATCCACCCCGAGTTGAAGTCGGCGTTGGCGAACATGGGGATCTCTAAGCTGTTCCCGGTGCAAGTTGCCGTTTGGCAAGAGACCGTTGGTCCGGGCAATTTCGAGCGAGACCTTTGCATAAACTCCCCAACAGGAAGCGGGAAAACCTTGGCCTACGCTCTCCCCATTGTCCAGTTGCTCTCCAAGCGCGTGCTCAGGTCCCTCCTGCGTGCCCTCGTCGTGGTCCCCACGCGCGACCTCGCCTTCCAGGTCAAGCGCGTCTTCGATGCCCTCGCCTCACCTCTGGGGCTGCGCGTCGGCTTGGCCGTTGGCCAGTCCTCTATTGCCGACGAAATCGCCGAGCTGGTGCACGTGCCGGAATGCGAGGCCGGTGGAATGTGTTATGATCCCGACGACTTGTCGTTTCGGGTTGGAAGAAGGCTTAGGAGTAAGGTGGATGTTTTGGTGGCAACCCCTGGAAGGTTGATGGATCATATCAATACTACTAAAGGCTTCACTCTTGAGCATCTTTGTTATCTTGTGGTCGATGAGACAGATAGACTACTCAGGGAGGCTTACCAGTCATGGCTACCTACTGTGATTGAGTTGACCAAATCAAATGACGACAATGATTTTCAGCCAATTGATTCTGTTTTTCCGTATTCTCTTGGTGCATTAAGAACCATAAGGAGATGTGGAGTTGAGAGGGGCTTCAAGGATAAGCCCTACCCTAGGCTGGCAAAGATGGTTGTATCTGCGACAATAACTCAGGACCCAGGCAGGCTTGTTCAGCTTAATTTGCATCACCCTTTGTTCCTGAAAGCTGGGCAATTGCGTTATCGACTTCCACAAAATTTGGAATCCTACAAACTGATCTGTGAAACAAAGGTCAAACCTTTGTATTTGGTTGCCCTTTTGAAATCACTGGGAGGAGAAAAATGCATAATTTTTACAAAATCTGTAGATTCAACACATCGTCTCTGGAAATTGCTGAATTGTTTTGGAGATCTGCAAATTGATATCAAGGAGTATTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGACATTGAATGAATTTCGGAAAGGTGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACGTAAAGACTTACGTTCATCGGGCTGGTAGGACTGCGCGAGCTGGCCAGACTGGCCACTGCTACACATTGATGTCTAGAGATGAGGTTCGACGATTTAAGAAGTTGATGCAAAAGGCTGAGGCTAGTTCTTGTCGTGAGCACACCATTCAATCATGTTTGATTGAAGCACTCCGCCCTACCTACGAATCAGCACTGAAAAAATATAAGGAGAAGATTTCAGAGGCAAGAAAGAAACCGAAGGATTAG 1509 0.4864 MGEAERRSVPVLPWMRDPVDVTLCQDLPLETVPSIHPELKSALANMGISKLFPVQVAVWQETVGPGNFERDLCINSPTGSGKTLAYALPIVQLLSKRVLRSLLRALVVVPTRDLAFQVKRVFDALASPLGLRVGLAVGQSSIADEIAELVHVPECEAGGMCYDPDDLSFRVGRRLRSKVDVLVATPGRLMDHINTTKGFTLEHLCYLVVDETDRLLREAYQSWLPTVIELTKSNDDNDFQPIDSVFPYSLGALRTIRRCGVERGFKDKPYPRLAKMVVSATITQDPGRLVQLNLHHPLFLKAGQLRYRLPQNLESYKLICETKVKPLYLVALLKSLGGEKCIIFTKSVDSTHRLWKLLNCFGDLQIDIKEYSGLQHQRVRSKTLNEFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYVKTYVHRAGRTARAGQTGHCYTLMSRDEVRRFKKLMQKAEASSCREHTIQSCLIEALRPTYESALKKYKEKISEARKKPKD* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1975 502 CDD SF2_C_DEAD 313 444 - -
Dod04g1975 502 Pfam Helicase conserved C-terminal domain 325 436 IPR001650 -
Dod04g1975 502 Gene3D - 19 303 IPR027417 -
Dod04g1975 502 SMART helicmild6 352 436 IPR001650 -
Dod04g1975 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 328 478 IPR001650 -
Dod04g1975 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 458 IPR027417 -
Dod04g1975 502 PANTHER RNA HELICASE 29 486 - -
Dod04g1975 502 CDD DEADc_DDX51 39 300 - -
Dod04g1975 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 300 IPR014001 -
Dod04g1975 502 SMART ultradead3 47 312 IPR014001 -
Dod04g1975 502 Coils Coil 479 499 - -
Dod04g1975 502 Gene3D - 311 502 IPR027417 -
Dod04g1975 502 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 29 486 - -
Dod04g1975 502 Pfam DEAD/DEAH box helicase 53 286 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1975 Dod-Chr4 43163498 43171308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1975 57 451 Eukaryotic Initiation Factors Gene Family AT3G13920 23.881 3.17e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1975 K14807 - cit:102616133 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1975 04 43163498 43171308 Dod04g1975 04 43163498 43171308 ECH