Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1952 ATGAAGAGGGAGCATCAATATCTTCATCCCAACCAACGCGATCCATCATCCTCCATGCCCGCACCACCACAGCCGCCACATGCAACGGCCGCCACATGCGTCGGCTATTCAGGCTACTCCACGGCGGCTTCCGACGGCGGCGGCATGGACGAGCTCCTCGCGGTGGTTGGGTACAAGGTGAGGTCGTCGGACATGGCGGAAGTGGCGCAGAAGCTGGAGCAGCTTGAAGAAGCCATGGGAAACGGCCACGACGGAATCTCCCAACTCTTCTCCGATACTGTTCACTTCAACCCCTCCGATATTAACACCTGGCTCGAATCCATGCTCTCAAATTACGAAGCGCCGCCTCCTCCTCCACCGCAACCGTCCGTCGACTCATCCTCCTCCTCCGCCGCGTTCCTCCCTCAAACCGAATCCTCCACCATCACCACCTCCATCGACAAGGCCTTCGAAGAATCCTCCTCTTCCGATTACGACCTCAAAGCCATCCCAGGCAAAGCAATCTACACAACTGAGTCTCTCTCTCCTTCCTCCAAACGAGTCAAACCTTCACCCGCCGAGTCGTCGTCCTCGACTCGGCCGCTCGTCCTGGTTGACTCGCAGGAGAACGGGATCCGACTCGTACACACGCTCATGGCGTGCGCCGAGGCCGTGCACCAGAACAACCTCCCTCTGGCGGACGCCCTCGTGAAGCAGATCGGGTTCCTGGCGGTGTCTCAGGTCGGAGCCATGCGAAAAGTCGCCACCTACTTCGCCGAAGCCCTAGCCCGCCGGATCTATGGTGTGTACCCTGATAATTCGATCGACTACTCGCTCTCCGATATGCTCCAGATCCACTTCTACGAGACCTGTCCCTACCTCAAGTTCGCTCACTTCACCGCCAACCAAGCCATCCTGGAAGCCTTCCAAGGCAAGAACCGCGTCCACGTCATCGATTTCAGCATGAACCAAGGGATGCAGTGGCCGGCACTCATGCAAGCCCTAGCTCTCCGTCCAGGAGGCCCGCCGGCGTTCCGGTTAACTGGAATCGGACCTCCGGCGCCGGACAACTCCGATCACCTGCAGGAAGTAGGCTGGAAGCTCGCTCAATTAGCAGAAACGATTCATGTCGAATTCGAGTACAGAGGATTCGTCGCGAACAGCCTCGCGGATCTTGATGCGTCGATGCTGGAGCTCAGGCCGAGCGAGACCGAGTCGGTGGCGGTTAACTCGGTGTTCGAGCTGCACAAGCTGCTGGCTCGTCCCGGTGCGGTGGAGAAGGTGCTGTCGGTGGTGAGGCAGATCCGGCCGGAGATCGTGACGGTGGTGGAGCAGGAGGCGAACCACAATGGAGTTGGTTTCCTGGACCGGTTCACTGAGTCGCTGCACTACTACTCGACGATGTTCGACTCGCTGGAGGGTTCGGTGAACTCGCAGGACAAGGCGATGTCGGAGATGTACCTTGGGAAGCAGATCTGCAACGTGGTGGCGTGCGAGGGGCCGCACCGGGTCGAGAGGCACGAGACATTGGGCCAGTGGAGGGCCCGGTTCGGGTCGGCCGGGTTCTCACCGGTCCACTTGGGGTCCAACGCGTTCAAGCAAGCGAGCATGTTGCTGGCGCTGTTTGCGGGTGGGGATGGGTACAGAGTGGAAGAGAACAACGGTTGCCTCATGCTTGGTTGGCACACTAGGCCCTTGATTGCTACCTCCGCGTGGCAACTCGCCACCAAATCGGTGCTTGCTCACTGA 1728 0.5961 MKREHQYLHPNQRDPSSSMPAPPQPPHATAATCVGYSGYSTAASDGGGMDELLAVVGYKVRSSDMAEVAQKLEQLEEAMGNGHDGISQLFSDTVHFNPSDINTWLESMLSNYEAPPPPPPQPSVDSSSSSAAFLPQTESSTITTSIDKAFEESSSSDYDLKAIPGKAIYTTESLSPSSKRVKPSPAESSSSTRPLVLVDSQENGIRLVHTLMACAEAVHQNNLPLADALVKQIGFLAVSQVGAMRKVATYFAEALARRIYGVYPDNSIDYSLSDMLQIHFYETCPYLKFAHFTANQAILEAFQGKNRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLELRPSETESVAVNSVFELHKLLARPGAVEKVLSVVRQIRPEIVTVVEQEANHNGVGFLDRFTESLHYYSTMFDSLEGSVNSQDKAMSEMYLGKQICNVVACEGPHRVERHETLGQWRARFGSAGFSPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLATKSVLAH* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1952 575 Gene3D - 48 112 IPR038088 -
Dod04g1952 575 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 40 567 IPR005202 -
Dod04g1952 575 SMART DELLA_2 50 122 - -
Dod04g1952 575 MobiDBLite consensus disorder prediction 109 138 - -
Dod04g1952 575 Pfam GRAS domain family 207 566 IPR005202 -
Dod04g1952 575 MobiDBLite consensus disorder prediction 174 193 - -
Dod04g1952 575 PANTHER DELLA PROTEIN GAI1-RELATED 40 567 IPR030006 GO:0003712|GO:0005634
Dod04g1952 575 Pfam Transcriptional regulator DELLA protein N terminal 50 116 IPR021914 -
Dod04g1952 575 ProSiteProfiles GRAS family profile. 198 566 IPR005202 -
Dod04g1952 575 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1952 Dod-Chr4 42781503 42783341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1952 45 569 GRAS Transcription Factor Family AT2G01570 68.496 0.0 754
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod04g1952 GRAS 3e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1952 K14494 - twl:119991897 813.527