LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g1936	ATGATTGGAGGTAAAGACATTCGTAATGGCGTTGTTGACTCAGAGGGTGAGAACTCCAGGAGCAAGCTCTCAAGGCAGAATTTTGAGCCTAGCAGGGAGTACCCAGATGAAAAAGGTGTTGAATTTCTGAGAGATTCAAAGGTGGGTATTGGTGTTGGTGTTGATGGGGCTCTTGAGTCAAAACCACCTACCATGGTTGTTGTTGGAAGCTCAGGGTTGCAAGAGCTCACCCTCAGCTACCTCTGTGACAGCCAAAAGCTGGGTCTTGTTGAGAAAGATGTTCCTGCTCCTGTTCCTGGTAAGACCTTGCTGAATTCCATGGACAGATTTAGCCACAAAGGCAAAGAGGTTGTTGTCTCTGAGAATTCAAACCATGAGGGGAAATGGGTTGAAAGAGATTTCTTGAGCCTGAGTGAGACCAGAGAGAATTCCTCAAAGCGATCGGTTGAAGAAGAAGAAAAGGTTGAGAGAGACAGCAATAGGGACAAGAAGCCAAGGCTTGAGACACTGAATCTCTCTCTTGCTTTGCCTGATGTGTGTCTCTCTCTCACAGCTTCAAACGCCTTGCAGAACAATGGTGATCAACCTGTTAGGCCTAAGCCTAGCAGGCCCTCAACTACCACATATTCAAATGATTACACTGCAGCTTCCTTGTCTTACTCTTACTCCCACCCTTTCTCACACAACCCTAGTTGCTCACTCACCCGCAATTCAACTGACAATTTTGAGTATTCTGTCAGCAAAGATGACCAAATTTGGAACTGTGGGGAGGGGACTAATGGTTCTGTTCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGTCCAATCATGGTGGTGGTGGTGGTGGTGGTCTTAGCTCCTTTATGCAAGGTAATTGCCAGTTTAAGACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAATTGCCTGCCAGACCAAGGTTTGAGGCTCAGTCAGGGGACTCAAGGGGAAGGAATACTGAGAATCTGAGAGTCTTTGAAGGCATAGATGGTGAGATGAGGAAGTTCTCTAGGCCTGCGAGGATACTGAGGGAAATTGTTTCTGAGTCTATCCCTGTCATGGCATTGTCAATTCAGGAACTCACTGATGAAGTCATTGCTTCAACCAAGGAATACTTGAAGACTCTCATTGAGAAGCCTGAGAAGAAAGAGGAATTGCTCAGCCTCCAAAACAGGCTTGAGAGAAGATCTGATCTCACCGAGGAGACCCTTTCAAAGTGCCATAAAGTGCAGTTGGAGGTTTTGGTTGCTGTCAAGATGGGGCTTGTAAGCTTGTTATCTGGCAAGCTTCACTTATCTGAGATGGTAGAGATTTTCTTGTATAGGACATGTAGGAATTTGAACTGCAAGAGTCTGCTTCCTGTTGATGACTGTGACTGCAAGATTTGCTCCGGAAACAAGGGCTTTTGCAGTTCTTGCATGTGTCCTATCTGTTTGAACTTTGATTGTGCAAATAACACTTGTAGTTGGATTGGTTGTGATGCTTGTTCCCACTGGTGCCATGCTGCTTGTGGCATTCAGAAGAATCTCATCAAACCTGGGCCTAGTTTGAAGGGACCTTCAGGGACCTCAGAGATGCAGTTTCATTGTATTGGCTGTGGACATCCTTCAGAGATGTTTGGGTTTGTCAAAGATGTGTTCATGTGTTGTGCAAAGGATTGGGGCCTAGAAACCTTGATGAAAGAGCTTGACTGTGTGAGGAGGATTTTCAGGGGAAGTGAAGATCGCAAAGGGAAGGAGTTGCATGTTAAAACTGATGACATGCTGTTAAAGCTTCAAACTAAAATGGTATCACCTTTGGATGCCTGCAATTACATCACACAATTTTTCAGCTATGCGGATGGCCTGTCAGACTTTCCTGCTTCTGGTATATCTACAAAGGATTTGGCAGCATCTCAAGCTAACCTTGCAAAGGATACACCATCTCTTCCAAAATCCAGTTCTCTAATACCAAAATATACTTTTGACATGAGCTATTCTAGGCCACATTCTGCTGCCTTGCCAAATGATCTTCATCAGAAAGACCTCAAAGCTTCCATATTAAGTGAACTAAAAACTGATGCTGATTTCCAACTGGGGGCTTTATTGAGGAAGGGTGGACTTGAAAGCTTGGAGAGCATCGTGCGGATAAAGGAGGCCGAAGCCAGAATGTTCCAAACCAAAGCAGACGAAGCAAGGAGAGAGGCGGAAGGCTTCCAGAAGATGATCAGGACAAAGACTGCACAGATGGAAGAAGAGTATGCTGAGAAGCTATCCAAACTTTGTCTGCATGATACCGAGGAAATGCGGAGGAAGAAACAGGAGGAACTGAAAGTCTTGGAAAATTCCCATTTTGATTACTACAAAATGAAGAAGAGAATGCAAGATGAGATTGATGGTTTATTGCAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA	2451	0.4459	MIGGKDIRNGVVDSEGENSRSKLSRQNFEPSREYPDEKGVEFLRDSKVGIGVGVDGALESKPPTMVVVGSSGLQELTLSYLCDSQKLGLVEKDVPAPVPGKTLLNSMDRFSHKGKEVVVSENSNHEGKWVERDFLSLSETRENSSKRSVEEEEKVERDSNRDKKPRLETLNLSLALPDVCLSLTASNALQNNGDQPVRPKPSRPSTTTYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFEYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGGGGGLSSFMQGNCQFKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNTENLRVFEGIDGEMRKFSRPARILREIVSESIPVMALSIQELTDEVIASTKEYLKTLIEKPEKKEELLSLQNRLERRSDLTEETLSKCHKVQLEVLVAVKMGLVSLLSGKLHLSEMVEIFLYRTCRNLNCKSLLPVDDCDCKICSGNKGFCSSCMCPICLNFDCANNTCSWIGCDACSHWCHAACGIQKNLIKPGPSLKGPSGTSEMQFHCIGCGHPSEMFGFVKDVFMCCAKDWGLETLMKELDCVRRIFRGSEDRKGKELHVKTDDMLLKLQTKMVSPLDACNYITQFFSYADGLSDFPASGISTKDLAASQANLAKDTPSLPKSSSLIPKYTFDMSYSRPHSAALPNDLHQKDLKASILSELKTDADFQLGALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQKMIRTKTAQMEEEYAEKLSKLCLHDTEEMRRKKQEELKVLENSHFDYYKMKKRMQDEIDGLLQRMEATKQQWV*	817

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g1936	816	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	1	816	IPR004082	-
	Dod04g1936	816	MobiDBLite	consensus disorder prediction	1	38	-	-
	Dod04g1936	816	Pfam	PHD - plant homeodomain finger protein	454	578	IPR032881	-
	Dod04g1936	816	Coils	Coil	718	752	-	-
	Dod04g1936	816	MobiDBLite	consensus disorder prediction	187	211	-	-
	Dod04g1936	816	MobiDBLite	consensus disorder prediction	140	164	-	-
	Dod04g1936	816	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	367	389	IPR004082	-
	Dod04g1936	816	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	445	466	IPR004082	-
	Dod04g1936	816	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	712	732	IPR004082	-
	Dod04g1936	816	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	564	583	IPR004082	-
	Dod04g1936	816	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	751	773	IPR004082	-
	Dod04g1936	816	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	406	421	IPR004082	-
	Dod04g1936	816	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	491	511	IPR004082	-
	Dod04g1936	816	Pfam	Coiled-coil region of Oberon	675	805	IPR032535	-
	Dod04g1936	816	MobiDBLite	consensus disorder prediction	10	38	-	-
	Dod04g1936	816	Coils	Coil	794	814	-	-
	Dod04g1936	816	PANTHER	PROTEIN OBERON 3	1	816	-	-
	Dod04g1936	816	CDD	PHD_OBE1_like	484	543	-	-
	Dod04g1936	816	Coils	Coil	766	786	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g1936	Dod-Chr4	42586003	42589456	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g1936	376	657	PHD Gene Family	AT5G57380	25.342	2.66e-11	65.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g1936	-		-	gmx:100820216	1313.9