Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1902 ATGTCTGTGGCTGCTCCTAGTTCCCTTTTGAAGGTGGAAGAGATACAAGGAAGAGGGAGGGGAATGGTTGCGTCTCAAACTCTTAAAGGTGGCCAAATTGTCCTCAGAGATTCTCCTATCCTGCTGTATTCTGCCTTGCCCCTGATCTCAAAGACTTTGTCGTCGTCGTCCTCCTTCTGTGATCACTGCTTCAGAACTTTGCCACCATCTTTACAGGGAGATTTTTCATCATCCACGGTTTTGTGCCCTTCATGTTGCCATCATTGCTTTTGCAGCTCAAGTTGTCTCTCAAAGGCACTGAACTCCTCCCATTCTTCCTGGGTATGTCAAGCACTAGCTTGTCTCCAAGCCAATGCTCCACTGCTTGAACAGCCGGACGAGCTCCAAGTCCAGGCTCGCTTTCTCATTGCTGCCTACAATCTCGCCAATGTCTCCCCCTCGGACTTTCAAATTATTCTTTCTCTTCATGGTTCTCCTGATGATGCCACCCTTACTGCAGCTCAGTTCCTACACCCCCTTATTTCATCCCTCTGCTCACTTGCTCTCATTAGCCCCCAGAATGGATTCTCTTTGGAACTGACTTCTGCACTTCTGGCCAAGGACAAGCACAATGCTTTTGGCTTGATGCAGCCGTTCTCTGATGATAATGACCAGAGGTCTGTTCGAGCTTATGGTATCTACCCCTATGCGTCCTTTTTTAACCATGATTGCCTTCCAAATGCCTGCAGATTTGATTATGTGGACACTAATCAACCAGATGACAACCATAACACTGACATTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGGGAGATCTGTTTGAGCTACTTCCCTGTGAATGAAAACTATTCTAGCAGGCAGAAGAGATTGATGGAAGACTATGGCTTCACCTGTAACTGTGATCGATGTAATATCGAATCAAATTGGTCAGATAATGACAGTGTTGAAGGCATTGAGGAGGATGAAGAAGATGTTAAGGATGAAGAAGAGGTTATGGATGAGGACCAATGTGAAAATATGGCAGCAAGCGGTGATACTCCATCTAATGTCATGGAATGCAATGTCTGTGGCAAATTGAAGAGCGATGATGACTTCGATATTGACAAAGAACAAGATGGAGCTGCCATGGAGGACTGA 1143 0.4549 MSVAAPSSLLKVEEIQGRGRGMVASQTLKGGQIVLRDSPILLYSALPLISKTLSSSSSFCDHCFRTLPPSLQGDFSSSTVLCPSCCHHCFCSSSCLSKALNSSHSSWVCQALACLQANAPLLEQPDELQVQARFLIAAYNLANVSPSDFQIILSLHGSPDDATLTAAQFLHPLISSLCSLALISPQNGFSLELTSALLAKDKHNAFGLMQPFSDDNDQRSVRAYGIYPYASFFNHDCLPNACRFDYVDTNQPDDNHNTDIIIRMIHDVPQGREICLSYFPVNENYSSRQKRLMEDYGFTCNCDRCNIESNWSDNDSVEGIEEDEEDVKDEEEVMDEDQCENMAASGDTPSNVMECNVCGKLKSDDDFDIDKEQDGAAMED* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1902 380 Gene3D - 119 205 - -
Dod04g1902 380 MobiDBLite consensus disorder prediction 314 334 - -
Dod04g1902 380 CDD SET_SMYD 203 305 - -
Dod04g1902 380 Pfam SET domain 19 278 IPR001214 GO:0005515
Dod04g1902 380 ProSiteProfiles SET domain profile. 8 279 IPR001214 GO:0005515
Dod04g1902 380 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 345 375 IPR044238 -
Dod04g1902 380 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 2 345 IPR044238 -
Dod04g1902 380 MobiDBLite consensus disorder prediction 315 334 - -
Dod04g1902 380 Gene3D - 59 118 - -
Dod04g1902 380 Gene3D SET domain 21 305 IPR046341 -
Dod04g1902 380 SUPERFAMILY SET domain 8 301 IPR046341 -
Dod04g1902 380 SMART set_7 8 285 IPR001214 GO:0005515
Dod04g1902 380 Coils Coil 320 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1902 Dod-Chr4 42061945 42063208 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dod04g1902 SET 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1902 - - gmx:100783406 582.022