Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1896 ATGGTAGCCGAACACCCACAACCTCAGACTCAGCCTCAGCCTCAGCCTCAGCCTCAGCAACCTCCTTCCTCTGCACAAGACGAGGCCTTGAAGAGGAACACCGATTGCGTCTACTTTCTTGCATCTCCTTTGACATGCAAAAAGGGAAATGAATGTGAGTACCGCCATAGCGAGTATGCTCGGGTTAATCCTAGAGATTGCTGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTTCATTCCGTCATCCGCCTCTTGATGGATTGTTAGGATCACCGGTAGCCACTGCTGGTGGTGGACCATCTGTTCCCCCATCACAGATTCCAACGTCTGCAGCACATGCACCTTTTAATTCTAGTAAACAACCTGTCCCTTGCATTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGATGTGCCTTCTTGCACGGACCAAATCCTAGCACTGGCAATAAAGTTGTTACTCCAGTCCCATTGGCTAGCCAGGGAACTGAGGCACCTAGTTTTAAGAAGCCATTTGGTGGCAGTGAAAAGCATACACAAGAAAGGAAAAGTTTTCAAGGAAATGTTGTAAAGTCAGTTGGAGGTCCTGAAGCTAAATCTGCCCAAAAAGTTGAAAATACTTCACAGAAAAATAATTTTGAATTGCCAAAGGAGAAGCGTGTGCCACCACCATCTGCAGGATTTGATAATGAGGCTTCAAGACTTCAGATAACAAGTACTCCACCAGGGACCAATGGGCCTACTGTAGCCCGGTCTAGTCGACCGAATCAAGGGCGTGTGTCAGATGATCATGCTTTCCACAACAGTAAAGACAGTGATGAATTCCTCAGAGAATCCTCTCCTGGGTTTGATGTTCTTGTAGCCGATGAACTCAGGAATTCTGATTACTACCATGGTGAAGATGATTTTGGTAAAGCAAGAGGTCCAGATGAAAGGAACTTAGACTCCTTGAATGAATATGATTTGGGACATTCTGCTGATTATAGTTTAGCGGCTGATATTGATCAAGAAAGATTTTGTGTGCCCCAACGTTATGACTCATATGATCACACACAAGACCCATACATGTGGGAACAGCATAGAAAGGCATCAACCCATTTAGAAAGGAGGTCTAACCGCAGATCTGACAGTCCTGACAGTGTTGAGGTCTCAGATCTCCGACATCATCTATCCAAGCGCAGGAAGGTCAATGGTTTGAAATCTGTTGTCACTCATGAGTATGCCCTTGAGAGTCATGGTGACGAACAAAGTCACCGGTTCTTGCGGAAGGATTCACACCAGTTACCTTTGAATGAGAATTCCCTTAGCAATCGCTTCCGAGGAAGAATAAAGCTTCCAGCAAATGGTGTCGACGATCACTCTCAGAGGGAATCAGACAGAGGAAGAATTAGGAGCAGATTGTCATCTGGAAGGTTGCAGGCCCCTCACCAGGGAAGGCTTCAAGATAGAATTAGAGGAAGGGTGCAAGATGATGATGGGAGAAACTTCAGGGATCGGTCAATGGGGGACAGAAACAGTGATTTTGCTGGGCCAAAAAGCCTTGCTGAGCTTAAAAATGGGAGGAGCGCTGAGAACCTGGAGCAGCAATCACTTGGAAAGAGAAAAAGTTTAGGGGAACACACACAATCTGAAGATGATTTTCAATTTGATGGTCCAAAGCCTCTTAGTGAAATTTTGAAGGAGAAAAGAAGAGTTAGTGCTGGTGTATCTGGCAATTCATCCGACAAGAAGACTAGAGAAATTATCAATAACTCAGATGGTACAGCTGTCACGAAAACACAAAATGGAGCATTGCCTGAGACAAAGGAAGATGCCAAGAACCACTTGCCAGTTAATGAAGAATCATCCAAGCTTCAGGTCACTGACACGATTGAGAGAGACGTTGATAACACTGATGGAAATCACGGTCAAACATATGAGGATGGAGTGATCTATGATGAAACCGCGGAGGATCAGGAGTATGAGGGTGATGATCAGAGGGATGGCGACTATGACTATGAGCAAGTTGATGAGGGGGACTATGACTATGAGCAAGTTGATGAGGGTGAAAATCCTGAGCAAGAATACATGGAAGATGAAGATGGGGACGACTTTGCTAAGAAGATTGGTGTCGTGACTAGCTAG 2133 0.451 MVAEHPQPQTQPQPQPQPQQPPSSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLLGSPVATAGGGPSVPPSQIPTSAAHAPFNSSKQPVPCIFFQKGLCLKGDRCAFLHGPNPSTGNKVVTPVPLASQGTEAPSFKKPFGGSEKHTQERKSFQGNVVKSVGGPEAKSAQKVENTSQKNNFELPKEKRVPPPSAGFDNEASRLQITSTPPGTNGPTVARSSRPNQGRVSDDHAFHNSKDSDEFLRESSPGFDVLVADELRNSDYYHGEDDFGKARGPDERNLDSLNEYDLGHSADYSLAADIDQERFCVPQRYDSYDHTQDPYMWEQHRKASTHLERRSNRRSDSPDSVEVSDLRHHLSKRRKVNGLKSVVTHEYALESHGDEQSHRFLRKDSHQLPLNENSLSNRFRGRIKLPANGVDDHSQRESDRGRIRSRLSSGRLQAPHQGRLQDRIRGRVQDDDGRNFRDRSMGDRNSDFAGPKSLAELKNGRSAENLEQQSLGKRKSLGEHTQSEDDFQFDGPKPLSEILKEKRRVSAGVSGNSSDKKTREIINNSDGTAVTKTQNGALPETKEDAKNHLPVNEESSKLQVTDTIERDVDNTDGNHGQTYEDGVIYDETAEDQEYEGDDQRDGDYDYEQVDEGDYDYEQVDEGENPEQEYMEDEDGDDFAKKIGVVTS* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1896 710 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 147 IPR000571 GO:0046872
Dod04g1896 710 SUPERFAMILY CCCH zinc finger 122 146 IPR036855 GO:0046872
Dod04g1896 710 ProSiteProfiles Zinc finger C3H1-type profile. 121 148 IPR000571 GO:0046872
Dod04g1896 710 Pfam Zinc-finger containing family 31 85 IPR041686 -
Dod04g1896 710 MobiDBLite consensus disorder prediction 413 429 - -
Dod04g1896 710 MobiDBLite consensus disorder prediction 365 391 - -
Dod04g1896 710 SMART c3hfinal6 31 58 IPR000571 GO:0046872
Dod04g1896 710 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Dod04g1896 710 SMART c3hfinal6 63 86 IPR000571 GO:0046872
Dod04g1896 710 MobiDBLite consensus disorder prediction 622 637 - -
Dod04g1896 710 MobiDBLite consensus disorder prediction 1 28 - -
Dod04g1896 710 MobiDBLite consensus disorder prediction 448 469 - -
Dod04g1896 710 MobiDBLite consensus disorder prediction 647 696 - -
Dod04g1896 710 ProSiteProfiles Zinc finger C3H1-type profile. 61 87 IPR000571 GO:0046872
Dod04g1896 710 MobiDBLite consensus disorder prediction 234 259 - -
Dod04g1896 710 MobiDBLite consensus disorder prediction 413 710 - -
Dod04g1896 710 MobiDBLite consensus disorder prediction 154 281 - -
Dod04g1896 710 MobiDBLite consensus disorder prediction 536 567 - -
Dod04g1896 710 MobiDBLite consensus disorder prediction 570 601 - -
Dod04g1896 710 ProSiteProfiles Zinc finger C3H1-type profile. 30 59 IPR000571 GO:0046872
Dod04g1896 710 MobiDBLite consensus disorder prediction 260 281 - -
Dod04g1896 710 MobiDBLite consensus disorder prediction 481 508 - -
Dod04g1896 710 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 15 710 - -
Dod04g1896 710 Gene3D - 113 188 - -
Dod04g1896 710 Gene3D - 22 87 - -
Dod04g1896 710 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 15 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1896 Dod-Chr4 42011647 42015632 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod04g1896 zf-CCCH_3 6.8e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1896 - - gmx:100787836 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1896 04 42011647 42015632 Dod04g1896 04 42011647 42015632 ECH