Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1886 ATGAATGACCGGTATAGAGAGCTCAACAATCTTGCACAGAATGGTGCAGTTTCCAAGTTCAGACACAGAGGTCGTATTCAGTCATTGCTTCGACTTAAATTATTACAACGTGGAGTAACTGTTTTTGATCAATCCTGCCATATATCAGCAACATCAAAGGTGAATAGCCAACCACAAGGATCTGCAATTATGCAACCAAGTAAATGCAGGGAAAGATTAAGCATGGAAACTGAACATAAATCTTCAGCCCTGGTAGAAGTATCTGATCCGGGAAGGCCTCATAGGGAAATAGCAAATAACATCACACAATCGGATAACTCTGACACTATTAATCAGCTCAACAGAGACAGCCATTGCAATACTATTTTTGGCACTAGCATTCACAGTACAGAACCTACAAAGAACTCAATGGTGCAGGTTATTTCCAAGAATAGAGAAGAATCACATCCAAGTTCATACGTGACATTCCAAGTAACATTCTTTGAACATCAAAGAGATGAGGTTCCAAAAGAAATTATCGGAGCATCTTCATCCATTATTGATTCAAATGCAAATGAGATGGTCAATGAGGTAGATGCAAGTGACCAGCAGTATATTACTACTGAAACTGGTTACAATCATATAGCAGACATGGAAAATTCAAGTAACCAACAGTATGAAGAAAGCACTTACTATGATGATAGGGCAGAAGAGGAAGAGGTAGATGAGCCGAATTATGATGAAGCTAGTTATGACTGGATCAGTCCTATTTCTCGGCCTAGAAGCTATTGGGAAAAACTTAGGCAAGAATGGTATAGCGAGATCCTGGACATCGGTTCAAACAATGATGAGATACGTAATCTCCTTCGAAGAAGAACAGTGTCGACTTTTCTTTCTAGTGACTTCCGGGAAAGGATGGACAGATTGATGGAGTCTCGTATAGCATCATCACAGACACATGTTATTAGTAGTCAAGATGATGCGGAACACAGGCAAGAGAGTAGGAACAAGTTGGCGGCATTTTTTCACGAACGAATGAATTTCAAAGGCATTCCTCCAGATGGTGGAAGGGACAAGGAGAGAGAAGAGAAAGAGAAGGTGGAGGAGAGAATAAATGAGGAACAAGAAGAAGAGGTAGAGGAGCAAGAAGAGGAGAGCATCATCAATGATTCTGATCATGAAACCGGTTATTTTTGTAGCCAATCCTCACCATCAATGGATACACCTTCTTCCTCCACTCTTTTGAGGACATGGAGTTACAAAGACAATGAAGTTGCGGATGATTATGATGATAGAGTTGAATATGTATCCTCACAGCCACCACCTCAGTCAGAGTCTTTCTATCAGCATAGCCGGCAATACCCTTCATCTACAAATCATCAATCCATTGAAATGGAATTCCTATACGATTTGCGAGGGCAAATGGATCTACTTTTTCAAGAGATGTCTGAGCTAAGGAAATCACTTAAGATTTGCATGGATGTGCAGATGCAATTTCAACAACTCAAGAACCAAGAGGTTTACACAGTTAAAGAAGAAGAGAATAAGTTCGATGACAAGGCATCGAAGAGAGGCAAATGTGGCATTTGCTATGAGAAGGAAGTTGCCGCAGTTTTATACAGATGTGGGCACATGTGCACGTGTTTCGAGTGTGCGAACGAGTTGCAACGGAGGGGAGAAAATTGTCCAATATGTAAGGCTCCAATTATAGATGTTGTGCGAGTACATGGTGACAAATACGCATACAGTGTCTGA 1734 0.4083 MNDRYRELNNLAQNGAVSKFRHRGRIQSLLRLKLLQRGVTVFDQSCHISATSKVNSQPQGSAIMQPSKCRERLSMETEHKSSALVEVSDPGRPHREIANNITQSDNSDTINQLNRDSHCNTIFGTSIHSTEPTKNSMVQVISKNREESHPSSYVTFQVTFFEHQRDEVPKEIIGASSSIIDSNANEMVNEVDASDQQYITTETGYNHIADMENSSNQQYEESTYYDDRAEEEEVDEPNYDEASYDWISPISRPRSYWEKLRQEWYSEILDIGSNNDEIRNLLRRRTVSTFLSSDFRERMDRLMESRIASSQTHVISSQDDAEHRQESRNKLAAFFHERMNFKGIPPDGGRDKEREEKEKVEERINEEQEEEVEEQEEESIINDSDHETGYFCSQSSPSMDTPSSSTLLRTWSYKDNEVADDYDDRVEYVSSQPPPQSESFYQHSRQYPSSTNHQSIEMEFLYDLRGQMDLLFQEMSELRKSLKICMDVQMQFQQLKNQEVYTVKEEENKFDDKASKRGKCGICYEKEVAAVLYRCGHMCTCFECANELQRRGENCPICKAPIIDVVRVHGDKYAYSV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1886 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 575 IPR013083 -
Dod04g1886 577 MobiDBLite consensus disorder prediction 365 381 - -
Dod04g1886 577 SUPERFAMILY RING/U-box 502 565 - -
Dod04g1886 577 SMART ring_2 520 558 IPR001841 -
Dod04g1886 577 Coils Coil 350 378 - -
Dod04g1886 577 MobiDBLite consensus disorder prediction 343 364 - -
Dod04g1886 577 ProSiteProfiles Zinc finger RING-type profile. 520 559 IPR001841 -
Dod04g1886 577 MobiDBLite consensus disorder prediction 340 406 - -
Dod04g1886 577 CDD mRING-HC-C3HC5_NEU1 520 559 - -
Dod04g1886 577 PANTHER BNAC05G24000D PROTEIN 2 571 - -
Dod04g1886 577 Pfam Zinc finger, C3HC4 type (RING finger) 517 564 - -
Dod04g1886 577 PANTHER BNAC05G24000D PROTEIN 2 571 - -
Dod04g1886 577 MobiDBLite consensus disorder prediction 386 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1886 Dod-Chr4 41837085 41849113 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1886 512 568 C3H Transcription Factor Family AT3G06140 31.579 3.40e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1886 - - aip:107634025 484.952