Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1884 ATGAGGATTTCAACACTTGCACTAGTTGTGCTCCTCTTGTGCTTTTCTTCTCCCATGATCATAATAGCCCTTGGCCATGGCAACATGGACAGTGACACAACTTTGAGAGTGCTTTTGGAAGTGAAGAAGTCTTTTGATCAAGACCCACAAGACGTTTTGAGTGATTGGTCGGAGACCAACACAGACTACTGTAGTTGGAGAGGTGTATCATGTGGATCATTGAACTCGGACTCAAACTCGGTGCAAGTGGTGGGCCTCAACCTTTCTGACTCGTCACTCACCGGGTCAATATCACCCTCACTCGGTCTGTTACAAAACCTGCTCCACCTTGATCTCTCATCCAACAGCCTCACGGGTCCCATTCCACCTAACCTCTCCAACCTCACTTCATTGGAATCTTTGCTTCTCTTCTCTAACCAACTCACAGGTCACGTCCCCACTGAGTTTGGCTCACTCACGAGTCTCCGAGTCATGCGACTCGGTGACAACGAACTAACTGGCACGATTCCCGCGTCTCTTGGGAACCTTGTCAACCTGGTCAACCTTGGTTTGGCTTCATGCAGACTCACCGGGTCGATTCCACCTCAACTCGGTCGACTCAGCCGCATGCAGAATCTGATACTGCAGGACAACGACTTGATGGGACCGATTCCGAGCGAGTTGGGGAACTGCACAAGCCTCACCGTCTTCACTGCAGCTAACAACATGCTCAATGGCTCAGTCCCGAGTGAACTGAGTCAACTCAAGAGCCTCCAAATCTTCAACCTCGCCAACAACAACCTGTCAGGGGAGATTCCGAGTCAACTCGGTGAGATGAGTGAACTCGTTTACCTGAATTTCATGGGGAACCAACTTGACGGTGCTGTTCCACCGTCTCTAGCTCAACTGGGTAGCCTTCAAAATCTGGACTTGTCCATGAACAAGCTCAGTGGAGGGGTTCCAGAGGAGTTAGGAAACATGGGTCAGTTAGCTTTCATGGTTCTGTCTGCTGAGCTGAGCCAATGCCAGTCACTGAAACAACTTGATTTGTCCAACAACTCACTCAATGGGTCCATTCCTCTTGAGCTTTATGGGTTGCTGGGGTTAACTGATCTCTTGCTCAACAACAACAGCTTGGTTGGTTCCATCTCTCCATTCATTGGAAACCTCAGTAACTTGCAGACACTTGCTTTGTTTCACAACAATTTGCAGGGTGCTCTGCCAAAAGAGATTGGAATGCTTGGCCAGTTGGAAATTTTGTATCTTTATGATAATCAGTTGTCAGGAGCTATACATATGGAGATTGGTAATTGTTCTAGCTTGCAGATGATTGATTTCTTCGGAAACCATTTCAGTGGGGAAATTCCCATCACTATTGGAAGGCTGAAGGAGTTGAATTTCCTTCACCTTAGGCAGAATGAGCTTGTGGGTGAAATTCCTGCCACACTGGGTAACTGTCTTAAGCTGAATATCCTGGATTTGGCAGACAATCAGCTCTCAGGGGGCATTCCTACAACATTTGGATTCCTTGAGGCCTTGCAGCAACTCATGCTCTACAATAATTCTCTTGAAGGTAACCTCCCTCACCAACTGGTAAATGCAGCAAACTTGACCAGAGTGAATCTTTCAAAGAATAGATTGAATGGAAGTATAGCTGCACTGTGTAGCTCTCGATCGTTTCTCTCTTTTGATGTCACGAACAATGCTTTTGATGGAGAAATTCCTCCCCAATTAGGAAATTCACCCTCACTTGAGAGGATAAGATTAGGTGACAATAAATTTTCTGGTGAAATTCCAAGGGCATTGGGAAAAATCCATGAATTGATATTGTTAGACCTCTCAGGAAATTCACTCACCGGACCAATACCAGGTGAGCTTTCTTTGTGCAATAAACTGGCTTACATTGATTTACACAGTAACTTCCTTTCTGGACAAATACCACCATGGCTTGGAAGTTTGCCTCAGCTGGGAGAGCTTAAGCTTTCCTTCAATAACTTTTCTGGTCCTCTTCCATTAGGCCTTTTCAAATGTTCCAAATTGCTAGTTCTCAACCTAAATGACAATTCTCTCAATGGAAGTCTCCCAGCCGATATTGGTGATCTTGCATCCCTTAATGTCCTAAGACTTGGCCATAATAACTTATCTGGACCAATATCTGAGGCAATAAGTAAGTTGAGCAAGCTTTATGAGCTCCAGCTATCAAGAAATAGCTTTAATGGTGAGGTGCCAACTGAGATTGGAAAACTCCAAAATCTCCAAATCATTTTAGACCTCAGTTACAATAATCTCTCAGGTCAAATCCCACCTTCTCTTGGGTCATTGTCAAAATTAGAAGCACTAGATCTTTCCCACAATCAACTCAGTGGAGAAGTCCCTCCACAAGTTGGTGAAATGAGCAGCTTGGGAAAGCTTGATCTCTCTTACAACAACCTTGAGGGAAAATTGGACAAGAAATTCTCCCACTGGCCAGATGAGGCATTTGAAGGGAACCTACAACTTTGTGGAAGTCCTCTTGGGCGTTGCAACGGTGGTGATACTTCTGGAGGTGAGAAATCAGGCCTAAGTGAGTTGTCAGTAGTGGTTATCTCTGCAACTTCAACTCTAGCAGTCATTGCACTAATAATACTTGCATTGAGAATCTTCAAAAACAAGCAAGAAATTTCCAGGAAAGGCAGTGGAGTGAATTATACATACTCCTCATCTTCATCACAAGTACAGCGAAGGCCACTGTTTCAACCAAATGCTGCTGGAAAGAGAGATTTCCGATGGGAAGATATCATGGAAGCCACGAAAAATCTAAGTGATAGCTTCAAGATTGGTTCAGGAGGCTCAGGGACAATCTACAAAGCTGAATTGGCCACTGGAGAGACAGTGGCTGTCAAGAAGATTTCATCAAAAGATGATTTTCTGTTAAATAAAAGCTTCATAAGAGAAGTTAAGACACTTGGGAGGACCAGGCATAGACATCTGGTGAAGCTGATTGGTTATTGTACCAATGCAAACAAAGGAGCAGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGGAGTCTATGGGACTGGCTTCATGGGAAACCAGCCAAGGCCAGTAAAGTAAAGAGGAGCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTGGGATTAGCTCAGGGAGTGGAATACCTCCATCATGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAACATATTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTGGCAAAACCACTCACTGAGAATTATGACTCCAATACTGAGTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACATAGCTCCAGAGTATGCATACTCTCTACATGCAACAGAGAAAAGTGATGTTTACAGCATGGGAATTGTGCTCATGGAAGTTGTTAGTGGCAAAATGCCAACAGATGACACTTTCGGAGCAGAGATGGACATGGTGAGATGGGTGGAGATGCACATTGATATGCATGGCACTGCGCGTGAGGAATTGATAGATCCTGAGCTGAAACCTCTTTTGCCTGGTGAAGAGTTTGCTGCATTCCAGGTGCTTGAGATAGCCTTACAGTGCACCAAAACTACACCCCAGGAGAGGCCAACTTCGAGGAAAGTCTGTGATCTTCTCCTTCATGTTTTCAACAACAGAATGGCGGGGTTCGATAAGATGAATTTGGACCATTACAGGAGAACTTAA 3705 0.447 MRISTLALVVLLLCFSSPMIIIALGHGNMDSDTTLRVLLEVKKSFDQDPQDVLSDWSETNTDYCSWRGVSCGSLNSDSNSVQVVGLNLSDSSLTGSISPSLGLLQNLLHLDLSSNSLTGPIPPNLSNLTSLESLLLFSNQLTGHVPTEFGSLTSLRVMRLGDNELTGTIPASLGNLVNLVNLGLASCRLTGSIPPQLGRLSRMQNLILQDNDLMGPIPSELGNCTSLTVFTAANNMLNGSVPSELSQLKSLQIFNLANNNLSGEIPSQLGEMSELVYLNFMGNQLDGAVPPSLAQLGSLQNLDLSMNKLSGGVPEELGNMGQLAFMVLSAELSQCQSLKQLDLSNNSLNGSIPLELYGLLGLTDLLLNNNSLVGSISPFIGNLSNLQTLALFHNNLQGALPKEIGMLGQLEILYLYDNQLSGAIHMEIGNCSSLQMIDFFGNHFSGEIPITIGRLKELNFLHLRQNELVGEIPATLGNCLKLNILDLADNQLSGGIPTTFGFLEALQQLMLYNNSLEGNLPHQLVNAANLTRVNLSKNRLNGSIAALCSSRSFLSFDVTNNAFDGEIPPQLGNSPSLERIRLGDNKFSGEIPRALGKIHELILLDLSGNSLTGPIPGELSLCNKLAYIDLHSNFLSGQIPPWLGSLPQLGELKLSFNNFSGPLPLGLFKCSKLLVLNLNDNSLNGSLPADIGDLASLNVLRLGHNNLSGPISEAISKLSKLYELQLSRNSFNGEVPTEIGKLQNLQIILDLSYNNLSGQIPPSLGSLSKLEALDLSHNQLSGEVPPQVGEMSSLGKLDLSYNNLEGKLDKKFSHWPDEAFEGNLQLCGSPLGRCNGGDTSGGEKSGLSELSVVVISATSTLAVIALIILALRIFKNKQEISRKGSGVNYTYSSSSSQVQRRPLFQPNAAGKRDFRWEDIMEATKNLSDSFKIGSGGSGTIYKAELATGETVAVKKISSKDDFLLNKSFIREVKTLGRTRHRHLVKLIGYCTNANKGAGWNLLIYEYMENGSLWDWLHGKPAKASKVKRSLDWETRFKIAVGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSKMEAHLGDFGLAKPLTENYDSNTESNSWFAGSYGYIAPEYAYSLHATEKSDVYSMGIVLMEVVSGKMPTDDTFGAEMDMVRWVEMHIDMHGTAREELIDPELKPLLPGEEFAAFQVLEIALQCTKTTPQERPTSRKVCDLLLHVFNNRMAGFDKMNLDHYRRT* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1884 1234 Pfam Leucine rich repeat 720 780 IPR001611 GO:0005515
Dod04g1884 1234 SUPERFAMILY Protein kinase-like (PK-like) 908 1212 IPR011009 -
Dod04g1884 1234 Pfam Leucine rich repeat N-terminal domain 36 71 IPR013210 -
Dod04g1884 1234 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 331 1228 - -
Dod04g1884 1234 SUPERFAMILY L domain-like 36 329 - -
Dod04g1884 1234 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 12 324 - -
Dod04g1884 1234 SMART LRR_typ_2 407 431 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 646 670 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 503 527 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 128 151 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 152 176 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 335 359 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 383 406 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 767 789 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 296 320 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 791 822 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 104 127 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 455 479 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 718 742 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 694 717 IPR003591 -
Dod04g1884 1234 SMART LRR_typ_2 248 272 IPR003591 -
Dod04g1884 1234 Gene3D Ribonuclease Inhibitor 502 838 IPR032675 -
Dod04g1884 1234 Gene3D Ribonuclease Inhibitor 330 501 IPR032675 -
Dod04g1884 1234 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 12 324 - -
Dod04g1884 1234 ProSitePatterns Protein kinases ATP-binding region signature. 932 955 IPR017441 GO:0005524
Dod04g1884 1234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1057 1069 IPR008271 GO:0004672|GO:0006468
Dod04g1884 1234 ProSiteProfiles Protein kinase domain profile. 926 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g1884 1234 Gene3D Phosphorylase Kinase; domain 1 883 1006 - -
Dod04g1884 1234 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 331 1228 - -
Dod04g1884 1234 SUPERFAMILY L domain-like 328 615 - -
Dod04g1884 1234 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515
Dod04g1884 1234 Gene3D Transferase(Phosphotransferase) domain 1 1007 1228 - -
Dod04g1884 1234 Gene3D Ribonuclease Inhibitor 32 194 IPR032675 -
Dod04g1884 1234 SUPERFAMILY L domain-like 552 808 - -
Dod04g1884 1234 PRINTS Leucine-rich repeat signature 338 351 - -
Dod04g1884 1234 PRINTS Leucine-rich repeat signature 767 780 - -
Dod04g1884 1234 SMART serkin_6 926 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g1884 1234 Gene3D Ribonuclease Inhibitor 195 329 IPR032675 -
Dod04g1884 1234 Pfam Protein kinase domain 930 1209 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1884 Dod-Chr4 41817517 41821726 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1884 37 739 Receptor kinase-like Gene Family AT1G17750 35.402 1.21e-101 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Dod04g1884 Pkinase 8.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1884 - - gmx:100801889 1949.48