Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1872 ATGAGTACTGGGGACAGGCCCAATATGCATGAGCAAACTGGTTGCTTTGATTCAAACACAATGACAGGAGGTATCAGCTCTCTAAAAGATAGCTTCCCTCAAACTCTTCCAGACCCATCACCACCACTTATGGTTGCAGGCAACACCACAAACAGCAATCATAGTCTTGAAGAGAATATCAGGCTTTCTATGGAGGAGCTATCCTATCACCAGCACAATCCACAACAACCAGAAGATGTTTCCACCTATGCAAATGGAGTCCCTGCTACATCTATAGACATCCCACATCCTCAACATCTAGGTTTGAACATGGGAGACCCCTACAACAACAGCAACAACAACAACAGCATGGATAACAATTTGGTTCAACACGAAATTGATGTCCTTCCCTACCAGCAGTCCACTTGGAATTCCAGTGTTCAGGAAATGCAAGATATGGGCTATGCTAATCACCCAGAACACCAACCACATGATCAGCAGTTTCAGCAAATTGAGGCACAAAACTGCAGCCAAAGTTGCAATCCTTCCTCCATATTGGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTGCCCAGATGCTCAGCTTCATCTTTGCTCACCAACCCCACCATTTGCATAACAAACAAGACTCCCAGCAATTTTCAGAATTCAATGGGGTTTCTTGGAGACCTTCCGATAGGATCAGACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTCCATTTGAACCTGCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTTCAGTCTCTTCCCCGTGGGTACAGCTTGCCAACCAGCTCCATGAATCGTTCTCTCTTTGGTGGAGACGAGATAGAGGGAGATGGGAGCCAGCTTGACATGGGAGTGCTAGATTTCAACAGTGTCACAGCTTCTGTTGGCAAACGAAGGGAAGGAAAAGGTACCAAACACTTTGCAACTGAGAAACAAAGAAGAGAGCAATTGAATGGCAAATACAAAATCTTGAGGAGTCTTATCCCAAACCCCACCAAGGTTGATAGGGCATCTGTGGTGGGCGATGCCATTGAATATATAAAGGAGCTGCTAAGAACAGTCAGTGAGCTCAAGTTACTGGTGGAGAAGAAAAGATATGGGAAGGAGAGGTGCAAGAGACGAAAAACTGAGGATGATGCTGCAGAAAGCTGTAACATTAAGCCTTTCAGTGATCCAGATGGGTGCATAAGGACCTCATGGCTTCAGAGGAGATCCAAAGAAAGCGAGGTTGATGTCCGGATCATCGATGATGATGTTACGATCAAATTCTTTCAGAGGAAGAAGATTAACTGCCTGCTTTATGTCTCCAAGGTTCTGGATGAACTTCAGTTGGAACTCCACCATGTTGCAGGTGGACATGTTGGAGAATATTGCAGTTTCTTGTTCAACAGCAAGATAATTGAAGGTTCTTCAGTCTATGCAAGTGCAATAGCCAACAGGGTGATTGATGTTATGGACACTCAGTACGCTGCAGCAGTTCCACATACAAGTAGCTATTAG 1533 0.4527 MSTGDRPNMHEQTGCFDSNTMTGGISSLKDSFPQTLPDPSPPLMVAGNTTNSNHSLEENIRLSMEELSYHQHNPQQPEDVSTYANGVPATSIDIPHPQHLGLNMGDPYNNSNNNNSMDNNLVQHEIDVLPYQQSTWNSSVQEMQDMGYANHPEHQPHDQQFQQIEAQNCSQSCNPSSILDPPYPSPDLLNLLHLPRCSASSLLTNPTICITNKTPSNFQNSMGFLGDLPIGSDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTSSMNRSLFGGDEIEGDGSQLDMGVLDFNSVTASVGKRREGKGTKHFATEKQRREQLNGKYKILRSLIPNPTKVDRASVVGDAIEYIKELLRTVSELKLLVEKKRYGKERCKRRKTEDDAAESCNIKPFSDPDGCIRTSWLQRRSKESEVDVRIIDDDVTIKFFQRKKINCLLYVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVMDTQYAAAVPHTSSY* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1872 510 PANTHER TRANSCRIPTION FACTOR BHLH91 9 508 - -
Dod04g1872 510 PANTHER TRANSCRIPTION FACTOR BHLH91 9 508 IPR045895 GO:0006355|GO:0048658
Dod04g1872 510 Pfam Helix-loop-helix DNA-binding domain 315 361 IPR011598 GO:0046983
Dod04g1872 510 CDD bHLH_AtMYC1_like 317 389 IPR045896 -
Dod04g1872 510 SMART finulus 318 367 IPR011598 GO:0046983
Dod04g1872 510 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Dod04g1872 510 MobiDBLite consensus disorder prediction 1 33 - -
Dod04g1872 510 Gene3D - 306 376 IPR036638 GO:0046983
Dod04g1872 510 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 377 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1872 Dod-Chr4 41564389 41566633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1872 9 508 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 36.636 4.29e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g1872 HLH 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1872 - - gmx:100782512 786.949