Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1861 ATGGCAGAAACTGACCCTCTCACACCCACCCTTAGCCCCATGATGATCATAACCACCCCACGTGATGATCATGGTGGCCACCCTCGTGGTGCTCGTTCCCATTGGATGGTTCTTGTGGCAGCCATTACGTGCGCTTTCCTTTGTGCTCTAGGCCTCAACACCTTGCTACAGTGTGTGTTTCAATGTGCTACTCGTGTCCTCACAGAGCCCCTTCAGTGGTTTGCTTCTCGCAGGCTCAATTCTGGCCTCAAGAAGAAAGACATGGTAGCTTTGCCAACCTCAACTTACTGCCACTCATCATCATCTGGTGGCTCTCCATCTCCTTCGTCTGCTTCTTCTAATTGTTGTGCCATTTGCTTAGTGGATTTCTCTGATGGTGACCAATTAAGGTTCCTTCCACAGTGCAGTCACCATTTCCATGTGGTTTGCATTGACAAGTGGCTCCTCTCTCATTCTTCTTGTCCAACTTGCAGGCACCTCCTCAAATCTAATGGTTCAACTCACTCCTTCCATATTGTCATATCTTAA 528 0.4848 MAETDPLTPTLSPMMIITTPRDDHGGHPRGARSHWMVLVAAITCAFLCALGLNTLLQCVFQCATRVLTEPLQWFASRRLNSGLKKKDMVALPTSTYCHSSSSGGSPSPSSASSNCCAICLVDFSDGDQLRFLPQCSHHFHVVCIDKWLLSHSSCPTCRHLLKSNGSTHSFHIVIS* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1861 175 SMART ring_2 116 157 IPR001841 -
Dod04g1861 175 Pfam Ring finger domain 115 158 IPR001841 -
Dod04g1861 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 163 IPR013083 -
Dod04g1861 175 PANTHER OS06G0666500 PROTEIN 8 163 - -
Dod04g1861 175 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 163 - -
Dod04g1861 175 MobiDBLite consensus disorder prediction 1 28 - -
Dod04g1861 175 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Dod04g1861 175 SUPERFAMILY RING/U-box 115 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1861 Dod-Chr4 41483328 41483943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1861 30 161 C3H Transcription Factor Family AT2G17450 41.912 1.37e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1861 - - gmx:100779286 223.402