Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1852 ATGGTGAAGTTTCTGAAGACCAACAAGGCGGTTATCGTGCTGCAAGGGCGGTACGCAGGGCGGAAGGCGGTGATCGTGCGGAACTTCGACGACGGGACCCGCGACCGCCCCTACGGTCACTGCCTTGTGGCGGGGATCAAGAAGTACCCGTCGAAGGTGATAAAGAAGGACTCGGCGAAGAAGACGGCGAAGAAGTCTCGAGTGAAGGCGTTCGTGAAGCTGGTGAACTACCAGCACCTGATGCCGACGCGGTACACGCTGGACGTGGATCTGAAGGACGCCGTGACCGTGGACTGCCTCCAGGCGAAGGACAAGAAGGTGACGGCGCTCAAGGAGACCAAGAAGAGGTTCGAGGAGAGGTTCAAGACCGGCAAGAACAGGTGGTTCTTCACCAAGCTTAGATTCTGA 408 0.5809 MVKFLKTNKAVIVLQGRYAGRKAVIVRNFDDGTRDRPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVTVDCLQAKDKKVTALKETKKRFEERFKTGKNRWFFTKLRF* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1852 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Dod04g1852 135 Gene3D - 1 135 IPR038655 -
Dod04g1852 135 Coils Coil 100 120 - -
Dod04g1852 135 SUPERFAMILY Translation proteins SH3-like domain 3 135 IPR008991 -
Dod04g1852 135 CDD KOW_RPL27 6 88 IPR041991 -
Dod04g1852 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Dod04g1852 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Dod04g1852 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1852 Dod-Chr4 41403369 41404404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1852 1 135 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 82.963 9.93e-82 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1852 K02901 - pop:7462305 239.195