Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1836 ATGAAGGAAAACAACTTATCAGCTCCTGCAATGATTAACAGGAACTGGGTTTTAAAGCGCAAGCGGAGAAAGCTTCCTTTAGGACTGGATCAATCCTCTGGTAAAGAGCAACCCAATGCTAAAGAGCAATCCAACAGTAAAGAAGACAATTCTGCAACATCTGAATCTTCTAGGAGTGCTTCAGCTAAACGTGCACTAAAGACTGAAGTAGCTACTGATCAAATTTCTTCTAAGAAGAAAGGAAATGATGGGTCTTTCTTTGAATGCGTGGTCTGTGATCTTGGTGGCAACTTGTTGTGCTGTGATTTCTGTCCTCGCACTTATCATATGCAGTGTCTTAGTCCACCTCTTAAGCGTGTTCCCCCGGGGAAGTGGCCATGTCCAAGCTGCTCTGAAGAAAATGATCAACTAAAGCCTATAAGCCACCTGGATTCAATTTCAAAACGAGCAAGGACAAAGATTGTCAAGGCAAAATCAAAAGTTGGAGTTAACTCACTTAGCCTGGATAAAGTATCCCGAATTTTCGGAAGCAAACATATTTCGAAGAAAAGGTCCTCCAGCAAAGCAAAACCTATTTCAAGCATGGGAGTCAACTTCTTTGGAAAGAAACCATTGTCTTCCCTAGTGGATGCAAATTGTAGCAACAAGCCAAGTGACCCTTCTCTTGGGAGTTCCATGGAAGGAACTTCATCATGTGCAGATGCTGATGAAAAGAAATCGAGCACATCCCCAACAGTTTCCCCTGTGGATGGGAAGGCATCGTCACCTGCTAAGGAAGTTTTATCTCCCTCCAAAATTACTAATTTAGAGTCAAATGATGAACAGCTGGAGGGGAAGCCTTTAAGAAAGCCACTTGTTCTTGCAATTGCTGCTGGTGGAGAGGACGTTAGAAAAAGGAAGCATAAAGTTGTTAATAATAATGCTAGTCAAAAGAAGCGTAGGACTGAAAAGGGGAAAATTTTTGTCAATACTTCTGCAAAGGGAAAATCTGGACAAAATAAGGTACACAAGAAGCCAAAATCTGTAGGCCATAGCATTTCTGCGCCAGCATCCAAAGAGTATGTTGGAAACATGGATTCTGATGTCCAGCAGAAAGATGAGGTGTTCCCTCAGCCAATTAAAGACACGTCAAATGAGCTTGATAAATTGGGAAGTCATTTGGATGGAACTTTGATGCATGAAGATGGTGTTCTTCTTGAATTGCAGGTTGATCGAGTTCTAGGGTGTCGAATTCTTGTTGAGAACACAAACACACTACGAAATGTATCTTCGAGCATTGTTGATGACTCTTCTTCTGGTGATCTGGGAATCTCAGAAAACCAGAACACACAACTAGATGATAGTTCTGCTTGTGATAATGATTTGGATGCTGAAAAAGCTGAAAATCTTGTTGATGATCCCCAAAATGTTGTCAAGAGTTCTGATAAAGAAGGAACATTGCAAAACACTAATAAAGTGGAAAAAATAAATGTGTACAGAAGATCAACGACAAAGGAAAGTAAGAAGGGAAATCCCATAGATTCATTGAGTAAATCTACTGATGATTTACGTTCCTGTCCCAGGGATGTTAATGGTCAGGATGATTCTGCTGTATCTGCTGAACATTTGGAAAAAGCAAATGACAAGATGGAGGTAGAGGAGAGTATCACTGTTGCTTTAAGAAGTGAGGATAACCATGAGCTTCCCAAAAATTGTGAATTACAGGCCTCTCTCGAAACAAAACCAAGGGAAGTGGACATAGAGAAGGGAGTGAGTAGCAGTGTAGTTGACAATAAGGTTCAGGATGCTAATGTGGGTAAATCTTCATGTCTAAATGGAAAGGAAGTTTCCTACGAATTTTTAGTTAAGTTGGTAGGAAAGTCTCATATTCATAATTGTTGGATTTCTGAATCCCAGTTGAAAGTTCTTGCCAAGAGAAAACTAGAAAATTACAAGGCAAAGTATGGGATGGCAATAATAAATATTTGTGAGGAGCATTGGAAGCAGCCTCAGCGATTGCTTGCACTTCGTACTTCCAAAAACAGAACATCTGAAGCATTTGTAAAATGGACTGGACTGCCTTATGATGAATGCACTTGGGAAAGTTTAGATGAACCTGTGCTTCAAAACTCTTCTCATCTGATTACACATTTTAATAAGCTTGAAACCCTCACGCTGGAAAAGGATGCATCAAAGGAAAATTCAACAAGAAAAAACGTTGACCATCCGAATGACATATTTAATCTTACAGAGCAACCTGAGGAGCTAAAAGGGGGTTCCTTGTTTCCCCATCAGCTTGAGGCTCTGAATTGGTTGCGTAAATGCTGGTATAAGTCCAAAAATGTCATACTTGCTGATGAGATGGGGCTTGGGAAAACAGTATCGGCTTGTGCTTTTATTTCCTCATTGTATTTTGAATTCAAAGCTAAACTGCCTTGCCTAGTCTTGGTACCCCTTTCCACAATGCCTAATTGGCTTGCTGAGTTTTCACTGTGGGCTCCAGATGTGAATGTTGTGGAATATCATGGCTGTGCAAAAGCAAGAGCCATAATTCGCCAGTATGAATGGCATGCAAGTGATCCAAGTGGATTGAACAAGAAAACGGAAGCTTATAAATTTAATGTGCTTTTGACTACTTATGAAATGGTTCTTGCTGATTCTTCTCATTTGCGTGGAGTTCCTTGGGAAGTTCTTGTTGTTGATGAGGGCCATCGACTGAAGAATTCTGGAAGTAAGCTTTTCAGCTTGCTGAATACATTCTCTTTTCAACATCGTGTACTGTTGACAGGTACCCCTCTACAGAACAACATTGGTGAGATGTACAACTTGCTGAATTTCTTACAACCAGCATCATTTCCTTCTCTATCTTCATTTGAGGAGAAGTTTAATGATCTTACAACTGCTGAAAAAGTTGATGAACTAAAAAAACTTGTTGCTCCTCACATGCTTCGTAGACTTAAAAAGGATGCCATGCAAAATATTCCTCCCAAGACTGAAAGAATGGTTCCTGTTGAGTTGTCATCCATCCAAGCTGAGTATTACCGTGCGATGCTAACAAAGAATTATCAAATATTGCGGAATATTGGGAAAGGGGTTGCTCAACAATCTATGCTGAACATTGTGATGCAACTGAGAAAGGTCTGCAATCATCCATATCTCATACCAGGAACTGAACCTGATTCTGGATCCATTGAGTTTCTTCATGAAATGAGAATAAAGGCTTCGGCTAAGCTGACTCTTCTGCATTCTATGCTAAAGATTTTACATAAGGAAGGACACAGAGTTCTTATTTTCTCACAAATGACCAAGCTTCTTGACATCCTAGAGGACTATCTGAACATAGAATTTGGGCCTAAAACGTATGAGAGAGTGGATGGCTCTGTTTCTGTTACTGATCGTCAGTCAGCGATTGCACGCTTTAATCAAGACAAAAGTCGATTTGTTTTCTTGTTATCCACTCGTTCTTGTGGACTTGGGATAAATTTGGCAACTGCTGACACTGTCATCATCTATGACTCTGATTTCAACCCTCATGCAGATATTCAAGCGATGAATCGAGCACACAGAATTGGACAATCAAATAGACTTTTGGTATACCGGCTTGTAGTTCGTGCTAGTGTCGAAGAGCGCATTTTGCAGCTTGCTAAGAAGAAACTGATGCTTGATCAGCTTTTTGTAAATAAGTCTGGATCTCAAAAAGAAATAGAAGATATCTTGAAATGGGGAACTGAGGAACTCTTCAATGATTCTCCTGGCCTCAATGTAAGTGAAAATAATGATAGTAACAAAGATGAGACAGTAGCAGATATAGAACATAAGCAGCGGAGGAGGACTGGTGGTCTGGGAGATGTATACAAAGATAAATGTACAGATAGCAGCAGCAAGATTCTGTGGGATGAAAATGCAATTTTAAAATTGCTTGATCGTTCAAACCTTCAAGATAGTTCAACTGATAATGCTGAAGGGGATTCCGAGAATGACATGCTTGGCTCAGTGAAGGCCCTTGAGTGGAATGATGAGCCAACTGAAGAACATGGAGTGGGTGAATCTCCTCCTCATGGGACTGATGATATGTGTACTCAAAATTCTGAAAAGAAAGAGGATAATGTGGTGATTGGCAATGAAGAAAATGAATGGGACAAACTACTGCGCGAACGGTGGGAGAAATATCAAAGTGAGGCACAAGCAGCTCTTGGTCGAGGGAAGCGGCAGAGGAAAGCTGTTTCTTATAGGGAAGTATACGCTGCACACCCAACTGAAACAATGAGTGAGAGTGGTGGTGAGGATGATAAAGAGCCAGAACCAGAGCCTCAGCGTGAGTATACACCAGCAGGACGGGCCCTCAAGGCGAAATTTGCTAAACTCCGTGCTCGGCAGAAGGAACGACTTGCTCGGAAGAAAGCTGCTGGAGGATGTGAAGGAATCCCAGGAACTGAGTCACTCCAACAGTTTCCAACCAATGCTAAGGGTGGAGATGTAGGAGCGGGGGAGATGCATGCAGTTCAAGCGGGGCCTTCCATCAACTTAGAGGACAGCAAAAATAATCAACTTGCAGAAACTCAGAACAGTAACACAGACTCCCTTTCAAGGATTGACAAGCTTTCAAAACATAAAATGGGCAGTCATTTTGACGTTTCTGTCAATAATCCAAGCCGTTCTCTGCCTGACATTTTTCTTCCAAATCACCATTATAAGGGGGGGCTAAATACCTCAAACTTTATGCCCACCAACAATTTGCCGCCTGTCCTGGGACTTTGTGCTCCTAATGCGAACCAAATAGAATCATCGGAAAGTAATGTTTCCAAGTTAAATTGGAGACAAAGTAGACAAGGAGCCAGACAAGAGTTTCCTTTCAGTCTTGCATCTTGCTCTGGGACATCCATGGATGCTGAGGTCAGAAGTCAGGAAACAGCAGCAAATACCAAACTACCAGATGGGTTGACCGAAAATGTACACGAAAGTTTCAAAAATAGCATCCCTGATGGCAGTCTCCCGTTTGTTCCGGTATGCTCACTTAACATTGAGTGTGGATTTAATTGTCAATTGTGGTTGGCTTTATATGCATGTCTGGTTTTAATTCATATCCTTTCTTTTATTTATCTTTTTTCAGTTTCCACCTGCTCTGCGAGGAAAGGAACCCGAAAATGTAGGTGCTAG 5136 0.4124 MKENNLSAPAMINRNWVLKRKRRKLPLGLDQSSGKEQPNAKEQSNSKEDNSATSESSRSASAKRALKTEVATDQISSKKKGNDGSFFECVVCDLGGNLLCCDFCPRTYHMQCLSPPLKRVPPGKWPCPSCSEENDQLKPISHLDSISKRARTKIVKAKSKVGVNSLSLDKVSRIFGSKHISKKRSSSKAKPISSMGVNFFGKKPLSSLVDANCSNKPSDPSLGSSMEGTSSCADADEKKSSTSPTVSPVDGKASSPAKEVLSPSKITNLESNDEQLEGKPLRKPLVLAIAAGGEDVRKRKHKVVNNNASQKKRRTEKGKIFVNTSAKGKSGQNKVHKKPKSVGHSISAPASKEYVGNMDSDVQQKDEVFPQPIKDTSNELDKLGSHLDGTLMHEDGVLLELQVDRVLGCRILVENTNTLRNVSSSIVDDSSSGDLGISENQNTQLDDSSACDNDLDAEKAENLVDDPQNVVKSSDKEGTLQNTNKVEKINVYRRSTTKESKKGNPIDSLSKSTDDLRSCPRDVNGQDDSAVSAEHLEKANDKMEVEESITVALRSEDNHELPKNCELQASLETKPREVDIEKGVSSSVVDNKVQDANVGKSSCLNGKEVSYEFLVKLVGKSHIHNCWISESQLKVLAKRKLENYKAKYGMAIINICEEHWKQPQRLLALRTSKNRTSEAFVKWTGLPYDECTWESLDEPVLQNSSHLITHFNKLETLTLEKDASKENSTRKNVDHPNDIFNLTEQPEELKGGSLFPHQLEALNWLRKCWYKSKNVILADEMGLGKTVSACAFISSLYFEFKAKLPCLVLVPLSTMPNWLAEFSLWAPDVNVVEYHGCAKARAIIRQYEWHASDPSGLNKKTEAYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSGSKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLSSFEEKFNDLTTAEKVDELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSIEFLHEMRIKASAKLTLLHSMLKILHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTYERVDGSVSVTDRQSAIARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEIEDILKWGTEELFNDSPGLNVSENNDSNKDETVADIEHKQRRRTGGLGDVYKDKCTDSSSKILWDENAILKLLDRSNLQDSSTDNAEGDSENDMLGSVKALEWNDEPTEEHGVGESPPHGTDDMCTQNSEKKEDNVVIGNEENEWDKLLRERWEKYQSEAQAALGRGKRQRKAVSYREVYAAHPTETMSESGGEDDKEPEPEPQREYTPAGRALKAKFAKLRARQKERLARKKAAGGCEGIPGTESLQQFPTNAKGGDVGAGEMHAVQAGPSINLEDSKNNQLAETQNSNTDSLSRIDKLSKHKMGSHFDVSVNNPSRSLPDIFLPNHHYKGGLNTSNFMPTNNLPPVLGLCAPNANQIESSESNVSKLNWRQSRQGARQEFPFSLASCSGTSMDAEVRSQETAANTKLPDGLTENVHESFKNSIPDGSLPFVPVCSLNIECGFNCQLWLALYACLVLIHILSFIYLFSVSTCSARKGTRKCRC* 1712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1836 1711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 980 1242 IPR027417 -
Dod04g1836 1711 CDD PHD2_CHD_II 89 130 - -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 1500 1521 - -
Dod04g1836 1711 Pfam CHD subfamily II, DUF1087 1368 1406 IPR009463 -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 1243 1267 - -
Dod04g1836 1711 SMART DUF1087_2 1350 1411 IPR009463 -
Dod04g1836 1711 Gene3D - 745 987 IPR038718 -
Dod04g1836 1711 Pfam Chromo (CHRromatin Organisation MOdifier) domain 662 713 IPR023780 -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 216 250 - -
Dod04g1836 1711 ProSiteProfiles Chromo and chromo shadow domain profile. 661 723 IPR000953 -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 467 490 - -
Dod04g1836 1711 SUPERFAMILY Chromo domain-like 653 712 IPR016197 -
Dod04g1836 1711 Pfam Helicase conserved C-terminal domain 1073 1184 IPR001650 -
Dod04g1836 1711 ProSitePatterns Zinc finger PHD-type signature. 89 130 IPR019786 -
Dod04g1836 1711 ProSiteProfiles Zinc finger PHD-type profile. 86 133 IPR019787 -
Dod04g1836 1711 SMART PHD_3 88 131 IPR001965 -
Dod04g1836 1711 CDD SF2_C_SNF 1068 1195 - -
Dod04g1836 1711 SMART ultradead3 750 954 IPR014001 -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 491 505 - -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 32 63 - -
Dod04g1836 1711 Gene3D - 663 713 - -
Dod04g1836 1711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 143 IPR013083 -
Dod04g1836 1711 SMART helicmild6 1099 1184 IPR001650 -
Dod04g1836 1711 PANTHER PROTEIN CHROMATIN REMODELING 4 15 1669 - -
Dod04g1836 1711 CDD CD2_tandem 660 713 - -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 23 80 - -
Dod04g1836 1711 Gene3D - 988 1215 IPR027417 -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 1416 1432 - -
Dod04g1836 1711 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 766 943 IPR014001 -
Dod04g1836 1711 SUPERFAMILY Chromo domain-like 575 649 IPR016197 -
Dod04g1836 1711 Pfam PHD-finger 89 132 IPR019787 -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 464 529 - -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 216 277 - -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 424 450 - -
Dod04g1836 1711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 729 978 IPR027417 -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 1407 1439 - -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 260 274 - -
Dod04g1836 1711 Pfam SNF2-related domain 772 1047 IPR000330 GO:0005524|GO:0140658
Dod04g1836 1711 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1073 1232 IPR001650 -
Dod04g1836 1711 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 15 1669 - -
Dod04g1836 1711 SUPERFAMILY FYVE/PHD zinc finger 79 131 IPR011011 -
Dod04g1836 1711 MobiDBLite consensus disorder prediction 1458 1479 - -
Dod04g1836 1711 Gene3D - 577 648 - -
Dod04g1836 1711 SMART chromo_7 400 649 IPR000953 -
Dod04g1836 1711 SMART chromo_7 659 716 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1836 Dod-Chr4 41281725 41294090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1836 744 1227 RAD5 or RAD16-like Gene Family AT1G02670 26.140 9.06e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod04g1836 SNF2_N 7.1e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1836 - - aprc:113857453 2667.88