Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1807 ATGGCGAAAAGGGCAAGAAAGGGGTCTCAGTCTCAGTCTCGGAAGAAGAAAATCTCTCTCTCCGCAACGACACCCTCTGCCCCTGCCGGCAAACTAGTGCTGAGGATTAAATCAAATGAGGGAATGAAAAGATCAGTGCCGCAGCGTACCGATTCAAGAAAGAAACCCAACACGAAGCAAAAGAAGAAGAAGAAACAGAAGATTGATCCTAAGAAGCCAAAGAAACCTCCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAACCCAGATGTCAAGTCAATGCGTGATATTGGCAAAGCATGTGGAGATAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCAACCGAAAAGCGTGCAGAATTTGATAGTGCCATGGCAGAGTATAACAAGAAAATGGAAAGCGGTGAATTTGAAGAAACTGATGAGGAATCAGAGTTTGATGAGTAA 486 0.4259 MAKRARKGSQSQSRKKKISLSATTPSAPAGKLVLRIKSNEGMKRSVPQRTDSRKKPNTKQKKKKKQKIDPKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGDKWKTMTYEEKVQYYDIATEKRAEFDSAMAEYNKKMESGEFEETDEESEFDE* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1807 161 CDD HMGB-UBF_HMG-box 78 139 - -
Dod04g1807 161 SUPERFAMILY HMG-box 60 149 IPR036910 -
Dod04g1807 161 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 73 142 IPR009071 -
Dod04g1807 161 SMART hmgende2 72 143 IPR009071 -
Dod04g1807 161 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 160 - -
Dod04g1807 161 MobiDBLite consensus disorder prediction 55 71 - -
Dod04g1807 161 Gene3D High mobility group box domain 56 157 IPR036910 -
Dod04g1807 161 Pfam HMG (high mobility group) box 73 142 IPR009071 -
Dod04g1807 161 MobiDBLite consensus disorder prediction 1 77 - -
Dod04g1807 161 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1807 Dod-Chr4 40676063 40679128 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dod04g1807 HMG_box 2.4e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1807 - - gmx:100809401 177.178