Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1778 ATGGACGAAAAACTTCACTTGCGCTTCTGGGTTTTCATTTTCTCATTGCACTGCTTCATGGATTTGCTAGCTCTAAGCAGAATTACCAACATCACCACAGATAAGCAAGCACTTGTTGCTCTCAAATATTCCATCAGTGCAGACTCTCACCATTTCCTCACTCATAATTGGTCTCCAAACTCTTCTGTGTGCAACTGGGTTGGTGTCACTTGTGATGCTCGACATGGAAGGGTGAGGACCTTGAATCTTGGTGACATGGGTCTTAGTGGCACCATACCCTCCCATCTGGGGAACCTCTCCTTCCTTACTGAACTTGACCTTGGTGGAAACAGTTTACATGATCAGTTGCCAGAAGAATTAGTCCAGCTTCGTAGATTGAAGTTTCTCAACTTAAGCTACAATGAGTTCAGTGGAAACGTTCCGGCCTGGATAGGAGGCTTATCTTCACTCCGATACTTGAACCTTGATAATAATAGCTTTGGTGGTTCAATTCCAAAGTCTTTATCCAATCTGACAATGCTAGAGACCTTGCTTTGGGTCCACAATCAAATTGAAGGATCCATTCCACCTGAAGTTGGCAAAATGACCCATTTGAGGATTTTGTCTATCTCTGCAAACAGTCTTTCAGGGGTCATTCCTCGAACGATTTCTAACCTCTCTTCGCTGGAAAAAATCAGTTTATCTTATAACTCTCTATCAGGAGGCATTCCAAGGGAGATTGGTGAACTTCCACAGCTAAGAGTAATGTATCTCGGAAATAATCCGCTTGGTGGCTCCATACCATCAACAATCTTCAATAATTCAATGCTACAAGAGATTCAACTTCAGTCGAGTAATTTATCTGGCATTCTTCCACCAAACATATGCCGTGGACTTCCAAATATCCAAGTGCTTTATTTAGGTTTCAACCAGATTTCTGGTGAAATGCCATCTGTTTGGCATCAGTGCAAAGAGTTGACTCATTTAGCATTATCAGAGAATAGTTTCAGCCGAGGAAATATTCCACCTGATATTGGAAACTTAACCATGCTTGGCTTCTTATATCTTACTGGAGCCAACTTGGAAGGAGAAATTCCTTCATCTATTTTTAACATATCTTCAATAGTAATACTCAGCCTCTTTAGAAACAGGCTGAATGGTAGCCTCAGAGAAGAGACGTTTTATCAGCTCCCTTTACTAGAATGCTTGTATCTGGATGATAATCAATTTGCGGGAAGCATTCCAAAATCCATTAGCAATTGTACTATGCTCGAAGACTTAGATATGGGCAACAATTCTTTCACAGGTTCTATACCCCAGGGGATTGGTGATCTTCCTCGACTTACATCATTAGCTTTGGCAGATAACCTATTAAGTGGATCTATTCCCTCAAATATCTTCAACATGTCATCTCTGAGTTTCTTGTCCCTAGCACATAATTCCCTCTCAGGATCTCTTCCATTACATATCGGCCTAGAAGACTTGGAAAAACTATTCTTGTCTAGAAACAAACTCAGCGGAAAAATTCCAAGTAGCATATCCAATGCTTCTAAGCTTAACATCACTTTGGTCTTGAGGCTAAATAGTTTCAATGGAGTTATACCCAATGCTCTTGGAAATGTGAGACATCTCAAGTGGCTTGATGTAGCATACAATAATTTAACCGCTGCTGCTTCCACTATTGAATCAAGCTTCCCTACTTCTCTTAATGTTCTTTTCATATTTGGGAATCCATTCCATGCAAAGCTTCCCAAATCCATTGGAAACATGACCAATTTAAAGCAATTTGTTGCAAGTTCTTGTAGCATCTATGGTAACATTCCTCTGGAAATTGGAAATTCAAGCAATTTGTTTCGACTAGGTCTATCCCGAAATGATTTAAGTGGACCAATTCCAACTACAATTAATGGTTTGCAGTCTCTTCAATATTTGAACCTCTACAGCAATCAGCTACAAGGGACCATCATTGGTGAAATTTGTGAACTAAAAAAGCTGAGTGAGTTGTACATAACTGAAAACAAATTGATCTTTGGGGAGATCCCAGCATGCTTTGGTAACCTTACTTTCCTCAGAAAACTTTATCTAAACTCTAACAAACTCAGTAAGGTGCCCTCTTCTCTTTGGAGTCTCACAGACATTCTTGAGGTAGACTTATCTGACAATGTTTTAACTGGATCTCTTTCACTTGAAATTGGGAGCTTAGAAGCTATTACATTTTTGGATCTGTCAAAGAATAGGATTTCAGGAAGCATTACTAGAGCCATTACAGGATTGCAAAATTTGCAAATTTTGAACTTAGCCCAAAATAAATTGCTAGGGGATATTCCTGATTCACTTGGCAGTTTGATAAGTTTGATATCATTGGACTTATCCCAAAACTATTTGTTTGGTGTGATTCCAAAATCCTTGGAATCACTTCATTATCTGGAATTCATCAATCTTTCATACAATAGGTTAGAAGGAGAGATTCCCAATGGTGGACCTTTTAAAAATTTCACTGCCCAGTCTTTTATGTTCAACAAAGCACTTTGTGGAAATGCTCGACTACAAGTCCCGCCATGCAGTAAAGTAAAGAAGCAGAGGTCAAATGCAAATATGTTTTTCCTTAAATGCATATTGCCTATAGTGATGTTAATCATTTTGGTTGCTTTATGTGTATTCCTTTTAATAAGGCATCAAAGAAAGATTGATGGTGACCCCAATGAAGTAATGTTAGCAACAAAAATGATCTCATATTATGAACTTTCACAAGCAACCAATGGATTTGATGAGAGTAATTTACTTGGTAAGGGCAGTTTTGGCTCTGTGTTCAAAGGTATACTTTCAAATGGGATGGTAGTTGCAATCAAATTATTTAATTTGGACATGGAATTAGTGTCAAGGACCTTTAGTGCAGAATGCGAAGCAATGCGCAATCTGCGTCATCGAAATCTCATCAAGATCATCAATTGTTGTTCAAGTCCAGATTATAAGCTTTTAGTAATGGAGTTCATGCCCAATGGGAGCCTTGAGAGATGGTTGTATTCCCATAACCATTGCTTAGACTTCTTGCAAAGGCTTAATATAATGATAGATGTCGCATCTGCATTGGATTACTTGCATCATGGGTCTTTACCAAAAGTGGTTCATTGTGATGTAAAGCCTAGCAATGTCCTCTTGGACGAAGACATGGTTGGCCATGTTAGTGATTTTGGCATTGCTAAACTTCTAGATGAAGGACAATCCAAAGAATATACCAAAACCATGGCTACAACTGGCTATATTGCACCAGAGTTTGGATCCAAAGGGATTATCTCCACAAAAGGAGATGTATACAGTTTTGGGATAATGTTGATGGAAACATTCACAAGAAAAAAGCCGACAGATGAGATGTTTGTTGCTGGATTGAGCATGAAAGGTTGGATTGGTGAATCATTACCCCATGCAATTACTAGAGTCTTGGATTTCAATTTGTTACAGGATGAAGAGCATCATGTTGATGACATAATAGCATCTACTTCATCTATCTTGAGATTGGCTTTGAATTGTTGTGCAGATTTACCAGAAGAGCGTATGAATATGACTGATGTTGTTGCATCATTAATCAAAACCAAGGTCATGTTTCTGAAAACTAGTGAGTGA 3600 0.3872 MDEKLHLRFWVFIFSLHCFMDLLALSRITNITTDKQALVALKYSISADSHHFLTHNWSPNSSVCNWVGVTCDARHGRVRTLNLGDMGLSGTIPSHLGNLSFLTELDLGGNSLHDQLPEELVQLRRLKFLNLSYNEFSGNVPAWIGGLSSLRYLNLDNNSFGGSIPKSLSNLTMLETLLWVHNQIEGSIPPEVGKMTHLRILSISANSLSGVIPRTISNLSSLEKISLSYNSLSGGIPREIGELPQLRVMYLGNNPLGGSIPSTIFNNSMLQEIQLQSSNLSGILPPNICRGLPNIQVLYLGFNQISGEMPSVWHQCKELTHLALSENSFSRGNIPPDIGNLTMLGFLYLTGANLEGEIPSSIFNISSIVILSLFRNRLNGSLREETFYQLPLLECLYLDDNQFAGSIPKSISNCTMLEDLDMGNNSFTGSIPQGIGDLPRLTSLALADNLLSGSIPSNIFNMSSLSFLSLAHNSLSGSLPLHIGLEDLEKLFLSRNKLSGKIPSSISNASKLNITLVLRLNSFNGVIPNALGNVRHLKWLDVAYNNLTAAASTIESSFPTSLNVLFIFGNPFHAKLPKSIGNMTNLKQFVASSCSIYGNIPLEIGNSSNLFRLGLSRNDLSGPIPTTINGLQSLQYLNLYSNQLQGTIIGEICELKKLSELYITENKLIFGEIPACFGNLTFLRKLYLNSNKLSKVPSSLWSLTDILEVDLSDNVLTGSLSLEIGSLEAITFLDLSKNRISGSITRAITGLQNLQILNLAQNKLLGDIPDSLGSLISLISLDLSQNYLFGVIPKSLESLHYLEFINLSYNRLEGEIPNGGPFKNFTAQSFMFNKALCGNARLQVPPCSKVKKQRSNANMFFLKCILPIVMLIILVALCVFLLIRHQRKIDGDPNEVMLATKMISYYELSQATNGFDESNLLGKGSFGSVFKGILSNGMVVAIKLFNLDMELVSRTFSAECEAMRNLRHRNLIKIINCCSSPDYKLLVMEFMPNGSLERWLYSHNHCLDFLQRLNIMIDVASALDYLHHGSLPKVVHCDVKPSNVLLDEDMVGHVSDFGIAKLLDEGQSKEYTKTMATTGYIAPEFGSKGIISTKGDVYSFGIMLMETFTRKKPTDEMFVAGLSMKGWIGESLPHAITRVLDFNLLQDEEHHVDDIIASTSSILRLALNCCADLPEERMNMTDVVASLIKTKVMFLKTSE* 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1778 1199 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1034 1046 IPR008271 GO:0004672|GO:0006468
Dod04g1778 1199 Gene3D Transferase(Phosphotransferase) domain 1 991 1196 - -
Dod04g1778 1199 SUPERFAMILY L domain-like 43 379 - -
Dod04g1778 1199 Gene3D Ribonuclease Inhibitor 183 330 IPR032675 -
Dod04g1778 1199 ProSitePatterns Protein kinases ATP-binding region signature. 921 943 IPR017441 GO:0005524
Dod04g1778 1199 SMART LRR_typ_2 680 703 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 147 171 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 99 123 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 292 315 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 390 414 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 243 267 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 534 557 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 195 218 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 751 775 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 631 655 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 485 509 IPR003591 -
Dod04g1778 1199 SMART LRR_typ_2 438 462 IPR003591 -
Dod04g1778 1199 PANTHER - 361 1194 - -
Dod04g1778 1199 Gene3D Ribonuclease Inhibitor 555 856 IPR032675 -
Dod04g1778 1199 Gene3D Ribonuclease Inhibitor 331 554 IPR032675 -
Dod04g1778 1199 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Dod04g1778 1199 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Dod04g1778 1199 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 155 383 - -
Dod04g1778 1199 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 166 - -
Dod04g1778 1199 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 293 513 - -
Dod04g1778 1199 ProSiteProfiles Protein kinase domain profile. 915 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g1778 1199 SUPERFAMILY L domain-like 370 480 - -
Dod04g1778 1199 Pfam Protein kinase domain 916 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g1778 1199 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 361 1194 - -
Dod04g1778 1199 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515
Dod04g1778 1199 Pfam Leucine rich repeat 197 256 IPR001611 GO:0005515
Dod04g1778 1199 Pfam Leucine rich repeat 77 135 IPR001611 GO:0005515
Dod04g1778 1199 Pfam Leucine rich repeat 753 812 IPR001611 GO:0005515
Dod04g1778 1199 Pfam Leucine rich repeat 609 668 IPR001611 GO:0005515
Dod04g1778 1199 SUPERFAMILY RNI-like 485 818 - -
Dod04g1778 1199 Gene3D Phosphorylase Kinase; domain 1 896 990 - -
Dod04g1778 1199 SUPERFAMILY Protein kinase-like (PK-like) 897 1188 IPR011009 -
Dod04g1778 1199 SMART serkin_6 915 1194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod04g1778 1199 SMART LRR_sd22_2 727 753 - -
Dod04g1778 1199 SMART LRR_sd22_2 99 122 - -
Dod04g1778 1199 SMART LRR_sd22_2 631 654 - -
Dod04g1778 1199 SMART LRR_sd22_2 680 705 - -
Dod04g1778 1199 SMART LRR_sd22_2 195 221 - -
Dod04g1778 1199 SMART LRR_sd22_2 292 321 - -
Dod04g1778 1199 SMART LRR_sd22_2 485 511 - -
Dod04g1778 1199 SMART LRR_sd22_2 655 675 - -
Dod04g1778 1199 PANTHER - 155 383 - -
Dod04g1778 1199 PANTHER - 15 166 - -
Dod04g1778 1199 PANTHER - 293 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1778 Dod-Chr4 40394418 40401396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1778 12 1191 Receptor kinase-like Gene Family AT5G46330 33.088 5.35e-175 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Dod04g1778 Pkinase 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1778 - K13420 gmx:100784397 1700.26