LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g1721	ATGTCGGATGTGGAAGAGTATCGTTGCTTTATTGGTGGCCTTGCATGGTCAACATCTGATAGAAGGTTAAAGGATACATTTGAAAAGTTTGGCAATCTTATTGAGGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCGATGGAAGATGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGAACAATTACTGTTGACAAAGCTCAGCCTCAACAAGGTTCAAGTAGAGATGATGGTGATCGCCACCGAGAGCGTGGTCGCGATCGTGATCGCGATCGTAATCGAGATTATGGAGGTGGTCGAGGATCTAATGGTGGCGAATGCTATAAGTGTGGAAAACCTGGTCATTTTGCTCGGGAGTGCCCTAGTGAAGGGGGAAGAGGGGGAAGGTATGGTGGCAGGGAAGGTGGTAGATATGGTGGAAGCAGTGGTGGTGGCCACTATGGTCCTGATAGAAATGCAGATCGTTCTTCCGGTGGGCGCAGCAGGGATTCTGGTAGTCATGGTGATTCTGGAAATGATCGATACTATCGTGATCGTGCTGGACCATATGAACGACGGGGATCGGGAGGTGCTCGTTGA	627	0.4801	MSDVEEYRCFIGGLAWSTSDRRLKDTFEKFGNLIEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSSRDDGDRHRERGRDRDRDRNRDYGGGRGSNGGECYKCGKPGHFARECPSEGGRGGRYGGREGGRYGGSSGGGHYGPDRNADRSSGGRSRDSGSHGDSGNDRYYRDRAGPYERRGSGGAR*	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g1721	208	SUPERFAMILY	RNA-binding domain, RBD	4	117	IPR035979	GO:0003676
	Dod04g1721	208	Gene3D	-	119	180	-	-
	Dod04g1721	208	Pfam	Zinc knuckle	122	138	IPR001878	GO:0003676\|GO:0008270
	Dod04g1721	208	MobiDBLite	consensus disorder prediction	169	201	-	-
	Dod04g1721	208	MobiDBLite	consensus disorder prediction	76	208	-	-
	Dod04g1721	208	SUPERFAMILY	Retrovirus zinc finger-like domains	105	143	IPR036875	GO:0003676\|GO:0008270
	Dod04g1721	208	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	10	79	IPR000504	GO:0003723
	Dod04g1721	208	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Dod04g1721	208	SMART	c2hcfinal6	122	138	IPR001878	GO:0003676\|GO:0008270
	Dod04g1721	208	ProSiteProfiles	Zinc finger CCHC-type profile.	123	138	IPR001878	GO:0003676\|GO:0008270
	Dod04g1721	208	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Dod04g1721	208	PANTHER	TRANSFORMER-2-RELATED	1	169	-	-
	Dod04g1721	208	MobiDBLite	consensus disorder prediction	88	113	-	-
	Dod04g1721	208	Gene3D	-	2	118	IPR012677	-
	Dod04g1721	208	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	1	169	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g1721	Dod-Chr4	39669769	39673568	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g1721	10	93	Eukaryotic Initiation Factors Gene Family	AT1G22760	35.714	1.44e-10	58.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g1721	-		-	gmx:100815224	278.1