Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1689 ATGTCTCACTTTGGGAGGTCAGGTCCCCCGGACATCTCCGACACCTACTCTCTCCTCGTACTCAACATCACTTTCCGCACAACCGCCGACGACCTCTTCCCTCTATTTGACAGGTACGGTAAGGTTGTCGACATCTTCATCCCCAAAGACCGAAGGACTGGTGAGTCGAGGGGTTTCGCCTTTGTGCGTTACAAGTATGCTGACGAGGCTCAGAAGGCCGTCGATAGGCTCGACGGAAGAATGGTTGACGGCCGTGAAATAACTGTCCAGTTTGCAAAATATGGCCCTAATGCTGAGCGCATTCATAAAGGAAGGATTATTGAGTCAATCCCAAGAACAAGGTACAGGTCAAGGAGCCGCAGTCCCAGGAGAAGGTACCGTGATGATTACACAGACAGGGATTATCGGAGGAGAACTCGCAGCAGGAGTTATGATAGGTATGAACGCGACAGATACCGCGGGAGAGAGAAGGATTATCGCCGCCGCAGCAGGAGCCGCAGTGCCAGTCTTGATTGCAAAGGTCGTGGAAGGGGGCGCTATGATGATGAGCATCGTAGTAGAAGCCGGAGCCGATCAGTGGATAGCCGCTCCCCTGCACAGGACAGTCCTAGTCCTCGAAGGAGTCCTTCCCCCCAGAGGAGTGTATCTCCTCAAAGGAGTGCTTCCCCAAGGAAAAGCTCTCCAGGTGAAAGTCCTGAGATTCGGAGCCGTGATGGACGGTCTCCTTCACCTCGTAGTCGCAGTGTCTCACCACACGGTCGCCCTGATGCTTCAAGAAGCCCATCCCCTCGAAATTCAAACGGTGATGACTGA 813 0.5375 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDRYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIESIPRTRYRSRSRSPRRRYRDDYTDRDYRRRTRSRSYDRYERDRYRGREKDYRRRSRSRSASLDCKGRGRGRYDDEHRSRSRSRSVDSRSPAQDSPSPRRSPSPQRSVSPQRSASPRKSSPGESPEIRSRDGRSPSPRSRSVSPHGRPDASRSPSPRNSNGDD* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1689 270 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 269 - -
Dod04g1689 270 SMART rrm1_1 17 90 IPR000504 GO:0003723
Dod04g1689 270 MobiDBLite consensus disorder prediction 243 270 - -
Dod04g1689 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Dod04g1689 270 MobiDBLite consensus disorder prediction 112 270 - -
Dod04g1689 270 MobiDBLite consensus disorder prediction 195 229 - -
Dod04g1689 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Dod04g1689 270 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 269 - -
Dod04g1689 270 MobiDBLite consensus disorder prediction 122 194 - -
Dod04g1689 270 Gene3D - 4 103 IPR012677 -
Dod04g1689 270 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1689 Dod-Chr4 39373056 39376576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1689 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 7.37e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1689 K12891 - gmx:100778928 305.449