Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1674 ATGGAAAACGACGACGTTGATATGCTCGGCGCAGACAACACCGAAGAAGAAGAAGAAGCTGATTTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGGGAGATGCAGGCCAAGGTCGAGAAGGAGATGGGATCTGTGCAAGATCCTGCTACTGCTGCTGCAAGTCAGACCAATAGGGAAGAAGTAGATTCTCGATCAGTCTTTGTAGGCAATGTGGACTATTCATGTACTCCTGAAGAAGTGCAGCAGCATTTCCAATCATGTGGAACAGTGAACCGAGTCACCATTCGCACTGATAAGTTTGGCCAACCCAAGGGTTATGCTTATGTAGAGTTTGTCGAAGTAGAGGCTGTTCAAGAGGCTCTTTTGCTGAATGAATCTGAACTACATGGGCGCCAATTGAAGGTGACTGCTAAGAGGACCAACATACCAGGGATGAAGCAGTATCGACCCCGCCGGCCCAATCCTTACATGGGATTTCGAGGCAGAGCTGCTTATGCACCACCTCCCTTTGCCTTCGCTCCATATGGATACGGGAAGGTTCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTGA 606 0.4901 MENDDVDMLGADNTEEEEEADLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPATAAASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYMGFRGRAAYAPPPFAFAPYGYGKVPRFRMAMRYSPYY* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1674 201 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 148 IPR000504 GO:0003723
Dod04g1674 201 CDD RRM_II_PABPs 73 144 - -
Dod04g1674 201 Coils Coil 15 49 - -
Dod04g1674 201 MobiDBLite consensus disorder prediction 1 20 - -
Dod04g1674 201 Gene3D - 3 154 IPR012677 -
Dod04g1674 201 MobiDBLite consensus disorder prediction 1 23 - -
Dod04g1674 201 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 13 198 - -
Dod04g1674 201 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 142 IPR000504 GO:0003723
Dod04g1674 201 MobiDBLite consensus disorder prediction 47 71 - -
Dod04g1674 201 MobiDBLite consensus disorder prediction 56 71 - -
Dod04g1674 201 SUPERFAMILY RNA-binding domain, RBD 63 170 IPR035979 GO:0003676
Dod04g1674 201 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 13 198 - -
Dod04g1674 201 SMART rrm1_1 73 144 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1674 Dod-Chr4 39195988 39202596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1674 73 185 Eukaryotic Initiation Factors Gene Family AT2G36660 25.439 6.69e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1674 K14396 - mnt:21400190 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1674 04 39195988 39202596 Dod03g0190 03 2022281 2025127 PCT