LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod04g1673	ATGGCTTCCCTTTCCCTGCACCCGTCTCTTTCATCATATGATCCTAGTAGTAGTGATTATGAGACTAAACACAAGTCAAGACCAGCACCCCAGCAAACTGTCCTAGAGATTGATGATCATGTTGATCATGAGGTCAGCGCAGTGGAGACGGAATTAGCCTTTAACGTTCCGGGAAAGAACAACGTAGGAGAAGCTGCGGGTGGAACTCAAACAGAAGAGGTGCCAATATTCTTGACCTGGAAGGATGTATGGGTGACGGCGTCGATGGGAAGGAATGGAAGCAGACCAATACTTCAAGGTCTCACTGGTTATGCCAAGCCAGGCCAGCTCCTTGCCGTCATGGGCCCTTCTGGCTGCGGCAAGTCCACTCTTCTTGATGCTTTGGCAGGGAGATTGGGTTCAAACACAAGCAAAACTGGGGAGATTCTGATTAATGGTCGCAAAGAATCACTGGCTTATGGAACCACGGCATTTGTCACACAAGATGACACCTTAATAACAACGTTAACTGTGAGAGAAGCAGTGTACTATTCAGCTCAACTCCAACTACCTGACTCCATGTCTAAGGCAGAGAAGAAAGAGAGAGCAGACTTTACAATCAGAGAAATGGGTCTGCAAGATGCCATCAACACAAGAATTGGAGGAGGGTGGGGTGTTAAAGGAATCAGTGGGGGTCAGAAGAGGCGTGTGAGCATCTGCATTGAGATCCTAACACGCCCAAGACTTCTCTTTCTTGATGAACCAACTAGTGGACTAGACAGTGCAGCCTCCTATTATGTCATGAAAATAATTGCTACTCTGGATCAAAAGGATGGCATTCAAAGGACTCTGATTGCCTCAATCCACCAGCCTAGTAGTGAAGTTTTTCAATTTTTCCATAACCTTTGTCTTCTATCTAATGGGAGAACAGTTTACTTTGGACCTGCTTCTGGTGCAACAGAGTTTTTCGCTTCTAAAGGTTTTCCTTGTCCTGCACTCCAAAATCCATCTGATCATTTATTGAAAACTATAAACAAGGACTTTGATCAGGAAACTGAGCTGGGTTTAGCTGAGAATGGAACAATACCCACAGAAGAAGCAATTCGGATCCTTGTAGGCTCATATGAAACATCTGAAATGAACGAACAAGTTCAAAAAGAGGTAGAATTGCTGTCGAAAAAGGAAACTAGTTCAATAGGGAAGAAGAGAGAGCATGCTGGCATCCTTAGTCAGTGTATTATTCTTACCAAAAGATCTTCCATAAACATGTATCGTGATCTAGGATATTACTGGCTACGCCTTGTCGCAATTACGGGGTTGGCTGTTTGTTTAGGCACCATCTTCTATGGCCTGGGCACAAGTCATAACCCAATACAGGATAGAGGATCACTTCTTATGTTTGAGTCTTCATTCATAACTTTCATGACCATTGGTGGATTCCCTTCTTTTGTGGAGGTCATGAAGGTAATTTAA	1452	0.4401	MASLSLHPSLSSYDPSSSDYETKHKSRPAPQQTVLEIDDHVDHEVSAVETELAFNVPGKNNVGEAAGGTQTEEVPIFLTWKDVWVTASMGRNGSRPILQGLTGYAKPGQLLAVMGPSGCGKSTLLDALAGRLGSNTSKTGEILINGRKESLAYGTTAFVTQDDTLITTLTVREAVYYSAQLQLPDSMSKAEKKERADFTIREMGLQDAINTRIGGGWGVKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKIIATLDQKDGIQRTLIASIHQPSSEVFQFFHNLCLLSNGRTVYFGPASGATEFFASKGFPCPALQNPSDHLLKTINKDFDQETELGLAENGTIPTEEAIRILVGSYETSEMNEQVQKEVELLSKKETSSIGKKREHAGILSQCIILTKRSSINMYRDLGYYWLRLVAITGLAVCLGTIFYGLGTSHNPIQDRGSLLMFESSFITFMTIGGFPSFVEVMKVI*	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod04g1673	483	CDD	ABCG_EPDR	75	307	-	-
	Dod04g1673	483	Pfam	ABC-2 type transporter	404	481	IPR013525	GO:0016020\|GO:0140359
	Dod04g1673	483	Pfam	ABC transporter	99	250	IPR003439	GO:0005524
	Dod04g1673	483	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	78	315	IPR027417	-
	Dod04g1673	483	ProSitePatterns	ABC transporters family signature.	222	236	IPR017871	GO:0005524
	Dod04g1673	483	Gene3D	-	78	317	IPR027417	-
	Dod04g1673	483	Pfam	ABC-2 type transporter	282	382	IPR043926	GO:0140359
	Dod04g1673	483	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	78	325	IPR003439	GO:0005524
	Dod04g1673	483	MobiDBLite	consensus disorder prediction	1	32	-	-
	Dod04g1673	483	MobiDBLite	consensus disorder prediction	1	17	-	-
	Dod04g1673	483	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 11	42	482	-	-
	Dod04g1673	483	PANTHER	WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN	42	482	-	-
	Dod04g1673	483	SMART	AAA_5	107	302	IPR003593	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod04g1673	Dod-Chr4	39087368	39156101	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod04g1673	94	310	Calmodulin-binding Proteins	AT2G36910	30.667	3.29e-11	63.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod04g1673	K05681		-	gmx:100813462	651.744