Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1662 ATGGGGCTGCTTCACAGAAAGTTGAGCCAAGACGACTGTCTCGAGTATTGTTCATCAGAAAAACATGGTTGCGAAGTGAAAGGCTGCATCGGAAAATGCTCATCCCCTGGGAATCACAGCAAACTCTCCACCTACCTGATCATCATTTTTTCTGTTGTAGCAGCTGCTTTCTTTGTCTTCTGCTGCTACGCCATCTATGTCAAGTTTTTCTCTTCCAGGAACAGGTCAAGGAGGGGGCTATTATCATTATCATCACGGCAACAACAACAACAACAAGAAGCACAAGAAGACACGACCCGTGATGAGTTTCTCGATGAAGAGCATGGCCCTATGGTGGACCACCCCATCTGGTACATCCGCACACCGGGTCTCCACCAGTCAATCATCAACGCAATCACGGTTTGTAAGTACAAGAGAGGTGAGGGGTTGGTTGAAGGAACAGAGTGCTCTGTTTGCTTGAGCGAGTTTCAAGAGGATGAGAGCCTGAGGCTGTTGCCAAAGTGCAACCACGCTTTCCACTTGCCTTGTATTGACACCTGGCTTAGATCACACACCAATTGCCCCATGTGCAGGGCTCCCATTGTTACGAACCCTGGTGCTACAAGGATTCCATCTATGGAGCCTAATGTTGTTGATTCAAGTTCTTTGGAAGGTGCTACACAAATGGGAAGTTTGGAGAGTAGCGTTGGTGATGCTGGTGCTGAGTTGAGGAATGGATCGGTGGAAGAAGAGCAAGTGGAAGTTGAAGGTGGTGGAACAAGGGTGTGTGAGAATGAGGGTTCAGCTGCTGAGGTAGCAAATATGCAGCCAAGGAGATCAGTGTCTTTGGATTCTGCTTCTGCTGCTAAAATCAGTGCTGCTATTGCCACTGTTGTATCATCAGTGCAAGAATCTCATGGGAATTCAAAGAGGCAGATAGGGGAAGCAGCCAATGAACTAGTTGTTTCAAAGAGGTTTGTTGCTGCAAAAGGCAGTTCTTCTTCTTCTTCTTCTTCTTCGAGGACAAGGAACCTTCAGAGTGCGCCTGGTTCGATTAAGAGGTCGCGGTCCTTCAATGGAAAACACCTAATGTCATGGTATAACCGCAGCGGCCAGAAGAAGCCGAGTGCTCCTGTGAGAAGCTTTTGA 1128 0.4778 MGLLHRKLSQDDCLEYCSSEKHGCEVKGCIGKCSSPGNHSKLSTYLIIIFSVVAAAFFVFCCYAIYVKFFSSRNRSRRGLLSLSSRQQQQQQEAQEDTTRDEFLDEEHGPMVDHPIWYIRTPGLHQSIINAITVCKYKRGEGLVEGTECSVCLSEFQEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNPGATRIPSMEPNVVDSSSLEGATQMGSLESSVGDAGAELRNGSVEEEQVEVEGGGTRVCENEGSAAEVANMQPRRSVSLDSASAAKISAAIATVVSSVQESHGNSKRQIGEAANELVVSKRFVAAKGSSSSSSSSSRTRNLQSAPGSIKRSRSFNGKHLMSWYNRSGQKKPSAPVRSF* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1662 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 197 IPR013083 -
Dod04g1662 375 MobiDBLite consensus disorder prediction 324 375 - -
Dod04g1662 375 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 39 365 IPR044675 -
Dod04g1662 375 SMART ring_2 149 190 IPR001841 -
Dod04g1662 375 MobiDBLite consensus disorder prediction 324 347 - -
Dod04g1662 375 Pfam Ring finger domain 148 191 IPR001841 -
Dod04g1662 375 MobiDBLite consensus disorder prediction 81 102 - -
Dod04g1662 375 CDD RING-H2_EL5_like 148 191 - -
Dod04g1662 375 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Dod04g1662 375 SUPERFAMILY RING/U-box 143 210 - -
Dod04g1662 375 MobiDBLite consensus disorder prediction 354 375 - -
Dod04g1662 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 39 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1662 Dod-Chr4 38951566 38953958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1662 36 245 C3H Transcription Factor Family AT1G72220 44.907 2.34e-51 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1662 - - mtr:MTR_4g093830 318.546