Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1639 ATGGATCATAACGTGAATCCACAGCAGCAGCAGGCGGTGGCGGTTCCCATGCAGGTGGTGCAGCATTCTGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTCCACCGAGTAAGAGTTCTAATTGTGGTGGCAGTGCCAATGATTGTGCTCCCCACCCCCACCACTCTCGAACCAGTGAACTCACCATTTCCTTTGAAGGCGAGCTCTACGTTTTCCCTGCCGTTACCCCACAAAAGGTGCAGGCTGTATTGTTACTGTTGGGAGGGCAGGAGATGCCCTATAGTGTCCCCAGCTCTACCTTTTTGCTGCAGCAGAACTGTCAGGACATCAGGGGAATAAATGATCCTTCCCAAGGCTCAAAGCTTTCGCGGAGAATCGAATCGCTTGTTAGGTTTCGTGAAAAGCGAAAAGACAGATGTTTTGAGAAGAAAATTCGGTACACTTGCCGTAAAGAGGTTGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCTTCACTTAAGGAAAACAACAAGCCTCCTGGTGAAAAGTGGGATTTAAGTAACGGTACTTGTTGCCCAGAATCAATATGCCAGCATTGTGGAATCCATGAGAAGTCTACTCCAGTTATGCGTCGAGGACCAGGTGGTCCTAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGTACCCTGAGAGATCTCAGCAAATCAGGAAGGATTGCTTTTGAGCAAAATGAACTGGATACTTCAGCTGATATAAAGCCTTCAACAACAGAACCTGAAAATTATTGTGCTGACCAGAACAAGGAGAGCAGCCCTGAGGAAACTAAGCCTGTGTCAATAGAACCCAGACAGTTACCTGAGAGGACAAATGAGCAGTATATTCTAGAAACTGCTGAAGCGGTCACCAATGGCATGTCCATCCAAGTGGATAATCACGCTCTTAGTCTGCATGAGCAGGATATTCTTGAGGATCTTGCTGATGCTTCTGGGACAGAATTTGAGATCCCTGCAGGTTTTGATGAGCAGATTGATATTGATGATTCCAATATGAGGACTTACTGGCTGTGA 1062 0.468 MDHNVNPQQQQAVAVPMQVVQHSDEEEEEEEEEAPPSKSSNCGGSANDCAPHPHHSRTSELTISFEGELYVFPAVTPQKVQAVLLLLGGQEMPYSVPSSTFLLQQNCQDIRGINDPSQGSKLSRRIESLVRFREKRKDRCFEKKIRYTCRKEVAQRMHRKNGQFASLKENNKPPGEKWDLSNGTCCPESICQHCGIHEKSTPVMRRGPGGPRSLCNACGLMWANKGTLRDLSKSGRIAFEQNELDTSADIKPSTTEPENYCADQNKESSPEETKPVSIEPRQLPERTNEQYILETAEAVTNGMSIQVDNHALSLHEQDILEDLADASGTEFEIPAGFDEQIDIDDSNMRTYWL* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1639 353 MobiDBLite consensus disorder prediction 1 57 - -
Dod04g1639 353 SMART tify_2 54 89 IPR010399 -
Dod04g1639 353 MobiDBLite consensus disorder prediction 243 287 - -
Dod04g1639 353 Pfam GATA zinc finger 191 227 IPR000679 GO:0006355|GO:0043565
Dod04g1639 353 Pfam CCT motif 125 166 IPR010402 GO:0005515
Dod04g1639 353 CDD ZnF_GATA 190 233 IPR000679 GO:0006355|GO:0043565
Dod04g1639 353 Pfam tify domain 57 88 IPR010399 -
Dod04g1639 353 ProSitePatterns GATA-type zinc finger domain. 191 218 IPR000679 GO:0006355|GO:0043565
Dod04g1639 353 PANTHER GATA TRANSCRIPTION FACTOR 28 7 344 IPR045280 GO:0006355
Dod04g1639 353 MobiDBLite consensus disorder prediction 246 264 - -
Dod04g1639 353 ProSiteProfiles Tify domain profile. 54 89 IPR010399 -
Dod04g1639 353 Gene3D - 186 243 IPR013088 GO:0006355|GO:0008270
Dod04g1639 353 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 189 238 - -
Dod04g1639 353 MobiDBLite consensus disorder prediction 1 17 - -
Dod04g1639 353 ProSiteProfiles CCT domain profile. 125 167 IPR010402 GO:0005515
Dod04g1639 353 SMART GATA_3 185 238 IPR000679 GO:0006355|GO:0043565
Dod04g1639 353 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 7 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1639 Dod-Chr4 38696903 38701269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1639 60 234 Tify Gene Family AT1G51600 55.914 2.21e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod04g1639 CCT 5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1639 - - gmx:100785549 489.574