Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1625 ATGGGGAGAGGAAAAATCGTGATTCGAAGGATAGACAACTCGACTAGCAGACAAGTGACTTTCTCAAAGAGAAGAAGCGGGTTGATGAAGAAAGCCAGAGAACTATCCATTCTATGCGATGCAGAAGTTGGATTGATTGTATTCTCCTGCACCGGCAAGCTTTATGATTTTGCAAGCACCAGCATGAAATCTGTCATCGAGCGCTATAACAAGCTAAAAGAGGATCAATATCAGCTAGTGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGAGAGAAGCAGCAAGCTTGAGGCGACAACTTGAATACTTGCAGGAAATCCATAGCCAATTAATGGGCGAGCAACTATCTGATCTGAGTGTTAAAGAGCTACAAAATCTGGAAAACCAACTCGAGATGAGTCTGAAGGGTGTCCGCATGCAAAAGGTATTATCGGTAAACAAAATTCATCAAGAAAACATAGAACTCCACAAGAAGATGGACCTTATCCGTAGGGAAAATGCAGGACTGCAGAAGGTATTGAAGCACGGGGTGCGAAGTGAAGAAAATGCAACATCCAATAATCCTCCATGTACTATCAGCTATGCATATGATTTACCTGGGCCTATCAGTCTCCATCTAAGCCAGCAACAGCCTCAATACTGTGAACCACTAGCGAAAGCGAAGAGTCTGAG 671 0.4337 MGRGKIVIRRIDNSTSRQVTFSKRRSGLMKKARELSILCDAEVGLIVFSCTGKLYDFASTSMKSVIERYNKLKEDQYQLVNPASEVKFWQREAASLRRQLEYLQEIHSQLMGEQLSDLSVKELQNLENQLEMSLKGVRMQKVLSVNKIHQENIELHKKMDLIRRENAGLQKVLKHGVRSEENATSNNPPCTISYAYDLPGPISLHLSQQQPQYCEPLAKAKSL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1625 223 ProSiteProfiles K-box domain profile. 86 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod04g1625 223 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Dod04g1625 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod04g1625 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Dod04g1625 223 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Dod04g1625 223 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod04g1625 223 Coils Coil 120 140 - -
Dod04g1625 223 Coils Coil 86 106 - -
Dod04g1625 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod04g1625 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dod04g1625 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod04g1625 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod04g1625 223 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Dod04g1625 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod04g1625 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Dod04g1625 223 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1625 Dod-Chr4 38344874 38351367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1625 1 171 MADS-box Gene Family AT4G37940 70.760 7.31e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod04g1625 K-box 3.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1625 K09264 - gmx:100808145 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1625 04 38344874 38351367 Dod03g0246 03 2525871 2532291 PCT