Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1620 ATGGCCCAACTAACCATCGACGACGACAACAAAAAGAACAACAACTCTCCCAATCCCAAGTCACTAAACGACCCCGACGACTCTAGCATCAAAACGGACCTCCTCAAGGGCCTCTACGTCGAGATTAAGTTCCAAAAGCCCAATAAAATCCAAGCCGTTACTCTCCCCATGATTCTCAACCCTCCCTACAAAGACTTGATAGCCCAAGCCCATAACGATTCGGGCAAGACCACGTGTATCGTGCTCGGCATGCTCAGCCGGGTCGTTCAGGCCCCGCAAGCAGTCTGCATTTGGCCGACCCGAGAACTGGCCATTCAGAATGCGGAGGTGTTACGGAGGATGGGGAAGTACACGGGGATTAACACCGAGTGCGCACTAAATGCTGGGAGGTGCGGCAACATGCGGCTCTCTGTGGTCAGGTATTCCGGCGAAGCTTCAGCTGCTTACAGGGATCTGTGCACAGCTGCTAGTGTGTGGCATTCAGATGGGTTGCAGTCGCGATGA 504 0.5377 MAQLTIDDDNKKNNNSPNPKSLNDPDDSSIKTDLLKGLYVEIKFQKPNKIQAVTLPMILNPPYKDLIAQAHNDSGKTTCIVLGMLSRVVQAPQAVCIWPTRELAIQNAEVLRRMGKYTGINTECALNAGRCGNMRLSVVRYSGEASAAYRDLCTAASVWHSDGLQSR* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1620 167 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 10 130 - -
Dod04g1620 167 Pfam DEAD/DEAH box helicase 49 126 IPR011545 GO:0003676|GO:0005524
Dod04g1620 167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 125 IPR027417 -
Dod04g1620 167 MobiDBLite consensus disorder prediction 1 25 - -
Dod04g1620 167 Gene3D - 3 144 IPR027417 -
Dod04g1620 167 PANTHER DEAD-BOX HELICASE DBP80 10 130 - -
Dod04g1620 167 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1620 Dod-Chr4 38289116 38289666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1620 6 133 Eukaryotic Initiation Factors Gene Family AT3G19760 31.298 1.12e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1620 K18655 - gmx:100784739 159.458