Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1608 ATGGAGGATCCTTTTCTCCATCAGTGGCACTTGAGCTCTATTGATGAGCCTAGTTTACTACCAATTGCTGCTGCTTTTGGAGAGACTTTACAGCATCATTCATTGTCTTACCCAAGCTTCAACCCCAAAATTTCCATGGAAACTGCACTTGCTAGCACTGAAAGGCCTGCCAGACATCTCAAAAACAACAACTGGAGTGTCAACAAAACTGCTCAGACATCAGAGGTGCAATTCGCTCCTTGTCCAAACCTTGTTTCAATTGTGGATTCCACTTACATAGATCAGTTGGAATTGGAGAAGGCTAAGAATGAGATGGTTTGTCCTAAAACCAATAGCACAACTCCTAGAGACATGATGATCTCTCAAGGAACCATGGGGAATCAAAACTATGTGTTCATGGCTAGCCAGGAGGCCAAACAGATAGGGACACGTCCTAAACATTCTCAACCTGACCACATAATAGCTGAAAGGAAGAGGCGAGAGAAACTCAGCCAACGGTTCATTGCTCTATCTGCCCTTGTTCCTGGACTACAGAAGACAGACAAAGCTTCTGTTCTTGGAGATGCTATCAAGTACTTGAAGCAATTGCAAGAGAAAGTGAAGGCTCTTGAGGAGGAACAGAACATGAAGAAAACTGTGGAATCTGTGGTAGTCGTGAAGAAATCTCATTTATCCAATAATGCCGAAGACTCTGCTGAATCTGGTGGTCCCTTTGATGAGGCACTGCCTGAAATTGAAGCAAGATTTTGTGATAAGAATGTTCTCATAAGAATTCACTGTGAGAAGAACAAAGGACTTGTAGAAAAGACAATCAATGAAATTGAGAAACTCCATCTTAAAGTCACCAATAGCAGTGCCATGACATTTGGGAATTGTGCCCTTGATATAACAGTTATTGCTCAGATGGAAAAGGAATTTTGCTTGACCGTGAAGGATCTTGTGAGAAACCTGCGCTCAGCTTTTGCATTTGTCATTTGA 978 0.4223 MEDPFLHQWHLSSIDEPSLLPIAAAFGETLQHHSLSYPSFNPKISMETALASTERPARHLKNNNWSVNKTAQTSEVQFAPCPNLVSIVDSTYIDQLELEKAKNEMVCPKTNSTTPRDMMISQGTMGNQNYVFMASQEAKQIGTRPKHSQPDHIIAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVKALEEEQNMKKTVESVVVVKKSHLSNNAEDSAESGGPFDEALPEIEARFCDKNVLIRIHCEKNKGLVEKTINEIEKLHLKVTNSSAMTFGNCALDITVIAQMEKEFCLTVKDLVRNLRSAFAFVI* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1608 325 Gene3D - 145 221 IPR036638 GO:0046983
Dod04g1608 325 Pfam Helix-loop-helix DNA-binding domain 152 197 IPR011598 GO:0046983
Dod04g1608 325 PANTHER BHLH TRANSCRIPTION FACTOR 1 324 - -
Dod04g1608 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Dod04g1608 325 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 1 324 - -
Dod04g1608 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 211 IPR036638 GO:0046983
Dod04g1608 325 Coils Coil 186 213 - -
Dod04g1608 325 SMART finulus 153 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1608 Dod-Chr4 38179270 38181024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1608 143 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.615 1.71e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g1608 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1608 - - vun:114179595 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1608 04 38179270 38181024 Dod03g0263 03 2780960 2785070 PCT