Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1564 ATGCTCCTACCAGTAATAAAACAAATAAGTGAAGACCAGGATAATCAGCTAGAAACAGAGGCAAAAATTAAAGGGAAAATAATTTCTGATATTCATATCAAGCAGGTTGAATTTGGATCCAATGAGAAAAATTACTGTAATCGCTGCAAAACACCGATTTTGGATCTCCATAGAAGCTGCCCCAGTTGCTCGTATAGCATTTGCTTGAGTTGTTGTCAGGAATTAAGTGAAGGAAGAACTTCTGGAGAAATTAACTCATCTATGTTCAAGATACCTGGTAACATGAAAGCTTGCATTGCCAATGAGTGCCAACCTTTGGATGAGGAGGCAATTTCTAGTGGCAATTTAACTGCTAATTCAATGTTGCCCGACCAGACAGATTGTAATGGCATTGACAGCGTATCATGCCCTCCTGCAGAACTTGGTGGTTGTGGTAATAGCCACCTTGATTTGAGACGTGTTTTTCCCTCAAGTTGGATCAAAGAGATGGAAGAAAAGGCAGAAGAAATTGTTTGCAGCTATGAATTCCCTGAAACTTCTGATAAAAGCTCAACCTGCTCAATGTGTTCTGACTCAGATCAGAAAAGTGAAAGATATAGGCAGTTGCGAGAAGCATCTGTAAGAGAGGATTCAAATGATAATTGCTTGTTTCACCCCACAGTTTTGGACATCAGTGGCGATAATTTTGAACACTTTCAGAAACACTGGGGAAAAGGCCATCCTGTATTGGTGCAAGATGTGCTCCAAAATACATCAAACCTTAGTTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGCGGAGCATTACAAGATACGAGAGTAATAAGGACTTCCTTGAATCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTCGGCAGCATTTTACTGGGTCTCTCAAATGTCGTCCTCATAAAAACACTTGGCATGAGATGTTGAAACTAAAGGGGTGGTTGTCTTCCCAACTATTTAAAGAGCAGTTTCCAGCTCATTTTTCTGAAGTAATTGATGCTCTAGCAGTTCAAGAATACATGAATCCTACCTCTGGTGTGCTGAATTTAGCTGCAAATTTGCCACATGAGATTACCAAACCTGACATTGGGCCATATGTCTATATTTCATATGGCTGTGCTGACAGGCAAGCTGATTCTGTGACCAAACTCTGCTATGACTCGTGTGATGTGGTTAATATCATGGCACATACCACAGATGTTCCCCTCTCTACAGAACAGCTTACAAAAATAAGAAAACTACTGAAAAAGCACAAAACTTTGTGCCAAAAAGAGTCTTCTAAAATTGCTACGGAGCAGCTGGAGGAGCAGAAAGTGAAAGGAATGTCAGTACTGCATGCTGAAGACACGGAACAGAAAGGATTGCAGAGTATGATAAAAGAAGAAATGGACTTTTTAAGGAGAGTCAATAGAACATCTTACATCTCAACTGATGCAAAAAAAGCAGCTAGTCATGGTATAGACACCAATATTTCTCTGGATAGAGAATGTGATCTCTTATCTGATTCTGATTCTGATTCTGACCCATCACTTCTCCATGGGACTGTCCAAAGCACTGAGTTGTCTATAGGCTGTAATCCTATAAATCCCTCTAAAAGCTCTAAGAGTGAAAAAGACAAGTTTACTACTGAGAATTCTGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTTCCGAAGCTCATAGAATACCTTAGAAGACATTGTGATGAATTTTCTTATAACCATGACAATGACAAGAAGATGGTTCATCCAATTCTGGATCAGAGTATTTTTCTTGACAAAACTCACAAAATGAGGCTTAAGGAAGAATTTAAGATTGAACCATGGAGTTTTAATCAACGGGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGAAATCCTAAGTGTTGTGTTCATGTGGTATTGGAATTTGTCTCCCCTGAAAATGTTTCTGAGTGTATCAAGGTGATCGATGAGGTTCGACTGCTGCCGGCAGACCATAAATTCAAAGTAGACAGGCTGGAGGTGAAGAAAATGGCCCTTTATAGCATGAGCAAAGCCATTAAGGAAATTCGCGAGCTTACACCCTAA 2103 0.4013 MLLPVIKQISEDQDNQLETEAKIKGKIISDIHIKQVEFGSNEKNYCNRCKTPILDLHRSCPSCSYSICLSCCQELSEGRTSGEINSSMFKIPGNMKACIANECQPLDEEAISSGNLTANSMLPDQTDCNGIDSVSCPPAELGGCGNSHLDLRRVFPSSWIKEMEEKAEEIVCSYEFPETSDKSSTCSMCSDSDQKSERYRQLREASVREDSNDNCLFHPTVLDISGDNFEHFQKHWGKGHPVLVQDVLQNTSNLSWDPLIMFCTYLERSITRYESNKDFLESCLDWCEVEINIRQHFTGSLKCRPHKNTWHEMLKLKGWLSSQLFKEQFPAHFSEVIDALAVQEYMNPTSGVLNLAANLPHEITKPDIGPYVYISYGCADRQADSVTKLCYDSCDVVNIMAHTTDVPLSTEQLTKIRKLLKKHKTLCQKESSKIATEQLEEQKVKGMSVLHAEDTEQKGLQSMIKEEMDFLRRVNRTSYISTDAKKAASHGIDTNISLDRECDLLSDSDSDSDPSLLHGTVQSTELSIGCNPINPSKSSKSEKDKFTTENSGAQWDVFRRQDVPKLIEYLRRHCDEFSYNHDNDKKMVHPILDQSIFLDKTHKMRLKEEFKIEPWSFNQRVGEAVIIPAGCPYQIRNPKCCVHVVLEFVSPENVSECIKVIDEVRLLPADHKFKVDRLEVKKMALYSMSKAIKEIRELTP* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1564 700 MobiDBLite consensus disorder prediction 527 547 - -
Dod04g1564 700 ProSiteProfiles JmjC domain profile. 348 665 IPR003347 -
Dod04g1564 700 Pfam JmjC domain, hydroxylase 551 646 IPR003347 -
Dod04g1564 700 PANTHER PROTEIN B160 1 699 - -
Dod04g1564 700 Gene3D Cupin 220 674 - -
Dod04g1564 700 SMART cupin_9 329 665 IPR003347 -
Dod04g1564 700 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 699 IPR045109 GO:0032454|GO:0033169
Dod04g1564 700 SUPERFAMILY Clavaminate synthase-like 228 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1564 Dod-Chr4 37608503 37612538 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod04g1564 JmjC 5.6e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1564 K15601 - gmx:100810673 1033.48