Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1562 ATGGGCAGAACACCTTGTTGTGACAAGAATGGCCTCAAGAGGGGGCCCTGGACACCAGAGGAAGACCAGAAACTCGTTCATTACATTCAGAAACATGGCTATGGCAACTGGAGAACACTCCCAAAGAATGCTGGATTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGGTGGACAAACTATCTAAGGCCAGATATAAAGCGAGGTCGATTCTCTTTCGAAGAAGAGGAGATAATAATACAGCTACATAGCATTCTCGGCAACAAGTGGTCTGCCATAGCTTCACGCTTGCCGGGAAGGACAGACAATGAAATCAAGAACTACTGGAACACCAACATAAGAAAGAGGCTCCTGAGGATGGGAATTGATCCTGTGACGCATAGTCCAAGGCTTGACCTTCTTGACCTCTCTTCTGCCCTAACCTCATCCCTGTACGGTTCATCATCACCACAAATGAGCATGCTTGGCATGCAGCCTACGGTGAACCCAGAGCTTCTCAAGTTGGCCTCATCACTCTTCTCCTCCCCCTCTCACCATCAATGCCATGATGAGCTTCACAATACCAGTGCTCATCAAGAGATCAATAACCATCTCTGCAACCCCCAAATTCAGAACCATATCCCGCAACAGCTATTGCAAATTCATCATCATCAGGATGGTCAAGAAGGGTCATGTGGACCAGAATATTGCGGCACATTGAGCACGCCTAGTTGTGTCTCAATGCCTTTCACTCATCAAGCACACTATGTGGACGACCCGTACCTATCAAATAATTTCCACGACTTTGGTTCCTCCCCACAACAACATCATCATTCTCATGATGAGCTTAGTGATTGGCATACCAATGGAATAGCTTCTTCAGCCCCATATAATTATGCCACTCAATTACCAAGCTATGAGTATGACTATTATAATCTCATGGACCCACCTGTGTCGGAAACATCAACTTTCCAATGTTCCAATAACAACAGCATCCAGAACTTCAGCTTAGCTTCAGTTCTATCGACGCCTTCGTCAAGCCCCAAGCCTTTGAATTCGAATTCGTCAACGTATTTCAATGGGAGCTCCAGCACTGAGGATGAGAGGGAAAGCTATGTGGTCAGCAGCAACATATGTTAG 1116 0.4633 MGRTPCCDKNGLKRGPWTPEEDQKLVHYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEEIIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTNIRKRLLRMGIDPVTHSPRLDLLDLSSALTSSLYGSSSPQMSMLGMQPTVNPELLKLASSLFSSPSHHQCHDELHNTSAHQEINNHLCNPQIQNHIPQQLLQIHHHQDGQEGSCGPEYCGTLSTPSCVSMPFTHQAHYVDDPYLSNNFHDFGSSPQQHHHSHDELSDWHTNGIASSAPYNYATQLPSYEYDYYNLMDPPVSETSTFQCSNNNSIQNFSLASVLSTPSSSPKPLNSNSSTYFNGSSSTEDERESYVVSSNIC* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1562 371 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Dod04g1562 371 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod04g1562 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 365 - -
Dod04g1562 371 CDD SANT 69 112 IPR001005 -
Dod04g1562 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dod04g1562 371 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod04g1562 371 CDD SANT 16 61 IPR001005 -
Dod04g1562 371 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod04g1562 371 Gene3D - 69 116 - -
Dod04g1562 371 MobiDBLite consensus disorder prediction 335 371 - -
Dod04g1562 371 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod04g1562 371 Gene3D - 14 66 - -
Dod04g1562 371 SMART sant 13 63 IPR001005 -
Dod04g1562 371 SMART sant 66 114 IPR001005 -
Dod04g1562 371 PANTHER TRANSCRIPTION FACTOR MYB74 1 365 - -
Dod04g1562 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1562 Dod-Chr4 37579573 37581184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1562 1 210 MYB Transcription Factor Family AT4G21440 68.421 4.83e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod04g1562 Myb_DNA-binding 4.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1562 K09422 - gmx:778071 374.4