Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1546 ATGGCTTCTGCCTCGTCGTCGTCTTCTTCAGCTTCGTCCTCGAGGCTCTGCTACAACCCTGACTGCAAGGAATTCAAGTCCCAAGTTCCTAAGAAAGGTTGGAGACTCCGTTCCGGTGACCGTGCCGACCTTTGCGATCGATGCGGTTCTGCTTTTGAAGAAGGAAGATTTTGTGACACTTTTCACTTGAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAAGAAGCGGATTCATTGTGGATGCATTGTCTCAGACAATACCTTTATGTTGTTGGATCCTGGCGGAATTGAATGCAATGCATGTGCAAGGGAACATCTTATTTTGTCATCAATCCGGCCGTGGTCTCAATCTTTTTCCTTTCAAAATCATTTATCTCAGAGACTTAGAGACCTGTCTGCAAATAGTTGGAATCAATTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAATCTGTTCAATTCTCTTTCATCATCTGACATGCATCCAGATGTGTGCTCTGTAGTTGAATTATCACATAAGGTTGACAAGATTTACGGCAATGAAAGGTTGCCTGTCTCTTCCCTGGAAAGGAAAAATGAGGATTTTTCTGGAATATCTAATTGGAGCACTAAGCTTGGTTCACGGGAAATGATGCTTATGAATGGAATGAGGAATGAGGACAAATTAAGTTCATGTTTAAATATTTGCCAACAGTCTTCTTCTCTAAAGGAAGATTCATCTTTACGACCATTTACTCTGCCTATACCTTATGCGTCTCCAAATGAAAGAAATGGTCAAACTGGGGTAACTGGAAATCATCCACAACAAACTCCTCCACCTCCTCCTGGAAATCAATGTAGTGGCACTGTTCAATTAGCACCTGACTCATCAGGTGAAACACAGGTTCGCAATGGACGGCCTCGAGTAGATGCACGAGGAAGAAGCCAGTTACTACCACGATATTGGCCCAGATGTACCGATCAGGAGCTACAGCAAATATCTATCGATTCTAATTCTGTCATTACTCCATTGTTTCAAAAAACCTTGAGTGCTAGTGATGCTGGACGAATTGGGCGTTTAGTGCTACCAAAAAAATGTGCCGAGGCTTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAGTTTCGCTTCTGGCCCAACAATAACAGCAGAATGTATGTTTTGGAGGGTGTCACTCCCTGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTGACATTTAGCCGGTTGGAGCCAGAAGGGAGATTGGTTATGGGATTTCGTAAGGCTTCAAGTGCTGCTCAATCTGATCAGGACAATGAAACAAATAAGACTGGAAATGGATTTTCCACACATGGTGAGGCTGAGTTTGCTGATCCTAGTTCCTGGTCTAAAGTTGACAAGTCAGGCTACATAGCAACAGAAGCAATGGGGAGCAAATCTTCAATCTCCAGAAAGAGAAAGAGCAGCATCTTGGGTTCAAAGAGTAAACGTCTAAGAATTGAAAATGAGGATTTGATTGAGCTGAAGATTACTTGGCAAGAAGCTCAAGGCCTTCTCCGTCCCCCTCCTAACCATATTCCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATACGAGGATGCTCCGGTGCTTGGGAAACCGACCATTTTCACCACTGGTAATGTGGGGTAA 1713 0.4378 MASASSSSSSASSSRLCYNPDCKEFKSQVPKKGWRLRSGDRADLCDRCGSAFEEGRFCDTFHLNASGWRNCETCKKRIHCGCIVSDNTFMLLDPGGIECNACAREHLILSSIRPWSQSFSFQNHLSQRLRDLSANSWNQLAGSGPVPWKQAPNLFNSLSSSDMHPDVCSVVELSHKVDKIYGNERLPVSSLERKNEDFSGISNWSTKLGSREMMLMNGMRNEDKLSSCLNICQQSSSLKEDSSLRPFTLPIPYASPNERNGQTGVTGNHPQQTPPPPPGNQCSGTVQLAPDSSGETQVRNGRPRVDARGRSQLLPRYWPRCTDQELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSAAQSDQDNETNKTGNGFSTHGEAEFADPSSWSKVDKSGYIATEAMGSKSSISRKRKSSILGSKSKRLRIENEDLIELKITWQEAQGLLRPPPNHIPSIVVIEGFEFEEYEDAPVLGKPTIFTTGNVG* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1546 570 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 457 - -
Dod04g1546 570 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 12 457 - -
Dod04g1546 570 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 454 570 - -
Dod04g1546 570 CDD B3_DNA 339 440 IPR003340 GO:0003677
Dod04g1546 570 MobiDBLite consensus disorder prediction 439 476 - -
Dod04g1546 570 MobiDBLite consensus disorder prediction 255 269 - -
Dod04g1546 570 MobiDBLite consensus disorder prediction 442 461 - -
Dod04g1546 570 SMART B3_2 341 442 IPR003340 GO:0003677
Dod04g1546 570 ProSiteProfiles B3 DNA-binding domain profile. 341 442 IPR003340 GO:0003677
Dod04g1546 570 MobiDBLite consensus disorder prediction 243 283 - -
Dod04g1546 570 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 454 570 - -
Dod04g1546 570 SUPERFAMILY DNA-binding pseudobarrel domain 338 440 IPR015300 -
Dod04g1546 570 Pfam B3 DNA binding domain 341 440 IPR003340 GO:0003677
Dod04g1546 570 Gene3D - 319 446 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1546 Dod-Chr4 37313969 37321059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1546 14 558 B3 DNA Binding Superfamily AT4G21550 43.327 1.42e-136 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod04g1546 B3 5.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1546 - - gmx:100807252 925.62