Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1544 ATGAACGACCTGTTCTCAAGTTCCTTCAAGAAATACAGTGACTTGAAGCAGCAGAGCTATGCTAATGATGTGGAGGCCGGGAAGGAAAGTATCAATCTTGACAAGTTCTTTGAAGATGTGGAGAATGTGAAGGAAGAAATGAGGACAGTTGAGAAGCTCTACAGGAAGCTTCAGGAGTCCAATGAGGAGAGCAAGATTGTGCACAATGCGAAGACCATGAAGGATCTCCGAGGCAGGATGGACCAAGATGTTTCCCAGGTCCTCAAGCGTGTCAAGATCATCAAGGGCAAGCTCGAAGCTCTAGAGCGTTCCAATGCAGCCAACCGGAACATTCCTGGCTGTGGCCCTGGCTCCTCTGCAGACAGGACCAGGACCTCGGTTGTTAGTGGCTTGGGGAAGAAACTCAAGGACATGATGGATGATTTTCAAGGTTTGAGGGCAAGGATGCAGCTTGAGTACAAGGAGACAGTGGAGAGAAGGTATTTCACCATCACAGGTGAGAAGGCAGATGAGGAGACCATAGAGAATTTGATATCAAGTGGAGAGAGTGAGAGTTTCCTGCAGAGGGCAATCCAGGAACAAGGGAGGGGTCAGATCATGGACACCATATCAGAGATTCAGGAGAGACATGATGCTGTTAAGGAGATAGAGAAGAACCTGATTGAGCTGCATCAGGTTTTCTTGGACATGGCAGCTCTTGTGGAGTCTCAGGGCCAGCAGCTCAATAACATAGAGAGCCATGTTGCCCATGCTAGCTCTTTTGTGAGGAGGGGTACTGAGAACCTTCAGGAGGCTAGAGTGCACCAAAAGAGCTCAAGGAAGTGGACATGCTATGCCATAATTCTTGGTATTATCCTCCTCATTGTGATCCTGCTCCCTGTATTGATACAACTTTTGCCTCAATTGTTGAAATGA 915 0.4776 MNDLFSSSFKKYSDLKQQSYANDVEAGKESINLDKFFEDVENVKEEMRTVEKLYRKLQESNEESKIVHNAKTMKDLRGRMDQDVSQVLKRVKIIKGKLEALERSNAANRNIPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQLEYKETVERRYFTITGEKADEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTENLQEARVHQKSSRKWTCYAIILGIILLIVILLPVLIQLLPQLLK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1544 304 Coils Coil 33 63 - -
Dod04g1544 304 Gene3D - 30 162 - -
Dod04g1544 304 CDD SNARE_syntaxin1-like 202 264 - -
Dod04g1544 304 SMART tSNARE_6 198 265 IPR000727 -
Dod04g1544 304 Gene3D - 194 297 - -
Dod04g1544 304 CDD SynN 33 190 IPR006011 GO:0016020
Dod04g1544 304 Pfam SNARE domain 240 291 IPR000727 -
Dod04g1544 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Dod04g1544 304 PANTHER SYNTAXIN 6 294 IPR045242 -
Dod04g1544 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Dod04g1544 304 PANTHER SYNTAXIN-124-RELATED 6 294 - -
Dod04g1544 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Dod04g1544 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Dod04g1544 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1544 Dod-Chr4 37301330 37302244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1544 1 302 SNARE and Associated Proteins AT1G61290 77.483 4.29e-179 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1544 K08486 - gmx:100818999 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1544 04 37301330 37302244 Dod03g0339 03 4108215 4109432 PCT