Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1520 ATGCTTGACTGTGAACATGAAAATCAGAGACGGCCATCTCAGGCTTGCTTCTCCCTGTATGGTTTCCCTGGTTGTTATAGGGAATCATCCTCGCAGGGTGAAAGCAATGTGTCAGTTTGGGGAGACAATTCGAATCTGAGTACGTGGAAGGGTGAAAATGAGAGCCAATTCAATCATGCAGCAGGGGATGTTGAATCTGAACATGCTTCATACAGCTCTACCATTGAAAATGGTGATGTAGGTTTAGAAGATTTTGTTGAAGACACCGTTGGAGGAGTTTCTGGGCAACAGGAAAGTGACTCGTGTACATCTTTTCAAATATCAGATACGGATGCTGATAGATCTTTGCATGCTGTGACTTCAACTGATTCTACTCTTCATCAAGGTTCTCATGTTCGTAGTGATTTTAGTGACTACTATCTGTTTTCAAATTGTTACCAGGGAACAGATGATATAGCCTTTGTCGATGACCCATCTCTTGGGTTTTTGCCAAATGGTATTTGTTCTCAATTATGGACAAATGAAGAAATGACGAGTAACCTGAAGGCTGAAAATGTGGAGTTCTGTACTGATATGGCACCTGTGAGTAGTGGCATGCACTTAGTCGGTACTGGGGGAATATCGATTCAAGATAGTCAATTTATGCTTGCAGATAGTAGCTATCCATCATTTTTTTCTGATAATGTTACTTTTGAAGAGAAGGCATCAGTGCCTTTTTCAAATTGTGCTTCATACATGCCACATCAAGACCAATCACTTTGTTGGAAAGATGAAAGAGATGAACTGATGACACCTTACCAAAATAATTTTCACAATAATTTTGCTGGGTTCAATATAGACCAAGAGGCTAAACAATTATCTGATGTTTTTCCTTCTATGGAATGTCAGAGTTATGGATGTTTTGCATCTGAGAATAATTACAGAGTAACAACATCTGGCATAGCCAATCATTATCGAGATATCATTGATGGAACTGCCAGTGAACTTCAAGGAAATGCGGGCAATTTGAATTTAAAAGCCTTAGACCAATCTTTGCCCTGTGTTCAGGCATCCATTGCTGGTGAGAAGCAGTTTGGTTGTGTTAAGAGAGAAGGTGGGGGCAAAAGCGTTGATTCTAATAGTTCAAAAAGAAGTGCTGTGAATTTCCAAGTTGAGGATGACTCTGATGCCTGCATTATTGAACACATCAGTCACCCTGCACCTACAAGTCAATCTGCAGACATTGGTAATTCATTTCGTATATCTCAGTCTTCCAGATCTGTTGATTCCCAACCTTACATGGTTGGCAGCACAAGGCTGAGGGCTTGTGACGAGCGAAATATACTGCAAGTTGCATTGCAGGATCTATCTGAGCCGAATTCAGAAGTTAGTCCACCAGATGGATTGTTGGCAATTCCTCTTTTGAGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAAAATCAAGTTTAAATTGCCCAGGTGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACGGTGTCAACTATTGCTTTAATATTAAAGGAAAGAGCTCCAATACTTTCTGCATGCCCCAGTGCCCAAAAAGGTGAATTGGAAACTTTGAATCTGGATGCGGAGGATCACAAGTTTCCTCAGAATGGTCTAGTGAAGAAAGAATCTGAAACATGTGGAGATATGTCAATTGGAAATCCAACTGAGAGCAAGAGTTTGATGATGCAAGCAAAGGGAAGGCTATCTGCAGGAACCCTTATTGTTTGCCCCACTAGTGTCCTGCGTCAGTGGGCTGAGGAGTTGCATAATAAGGTAACCAGCCAAGCAAACCTCTCTGTGCTAGTCTACCATGGAAGCAACCGAACCAAAGATCCTCATGAGGTGGCCAAGTATGATGTTGTTCTCACAACTTATGCCATTGTCAGTGTGGAGGTCCCTATGCAGCCTGTAGTTGACAAAGATGATGAAGAAAAGGGAACTTTTGAAGATCCTGATATACCAAGTAGGAAGAGGAAAGGCCCTTCTAATTCTCGTAAAAATGGCAAGAAACGAAAAGACAACACAATGCTTGAGGGTATTGCCCAGCCTCTTGCAATGGTGTCGTGGTTTAGGGTTGTCCTGGATGAGGCCCAAAGTATTAAGAATCATAAAACCCAGGTTGCAAGGGCCTGTTCTGGTCTTCGTGCTAAGCGTAGATGGTGTTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGACCCTTTTGACATCTATACATCATTCCGTTCTATGATTAAGATCCCGATTAGCAGAAGTCCAGCAGAAGGCTATAGTTTTATACGAGCTGTCCTAAAGAAAATAATGTTACGTCGGACCAAAGGCACACTCCTAGATGGGGAACCTATTATTTCCTTGCCGCCAAAATTTGTAGAGCTGAAACAAGTTGATTTTTCGAGGGAGGAACGTGATTTCTATTCCAGACTTGAGGCTGATTCACGTGTACAGTTTCAGGAATATGCTGATGCCGGAACTGTGAAACAAAATTATGTAAACATTTTGTTCATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCCCTGCTTGTCAAGCGTTACAATTCTAACTCTCTGTGGAGATCTTCGGTTGAGATGGCGAAGAAGCTTCCCCAGGACAAACAAGTGTCTCTCTGTGGAATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAATCTGTGGTCACGTTTTCTGTAACCAGTGCATTTCTGAACATCTTACTGGTGATGACAATCAGTGCGCTGCTACAAATTGCAAAACTCAACTGAGCATGTCTTCTGTGTTTTCAAAAGCCACACTGAACAGTTGTCTTTCTAACCACGATTGTGATAATTCGCCTGGTTGCTCCGGTTCTCAAGTGGAGGAATTTGAGCCTTGGTCTCAGAGTCAGCCATACGATTCCTCTAAAATTAAGGCTGCGCTTGAGGTGTTGAAGTCACTGGGTAAAGTACAGTGCTATACATCAAAAAATATTTCTTTACCTAGCACTTTTGCAGAAAATACTGATTGCCCTGGGATCTCCTCTGATGTTAACAATGGGGAATCCTTTAAGGATTTTCCTGAAAGTCAAAATTTGTCTGGGAATAGATGGTCTAATAGTGTAGGAGAGAAAGCAATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTGCTTGAAGTGTGTCTCAAGAATTCTTCAATTCAGTACAGAAGGCTTGATGGAACGATGTCTGTCAGTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACATGGTGGCGGCCTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGATCAGGCAATAGATAGAGCACATCGAATTGGGCAGACCCGACCTGTGACTGTTTTGCGTTTAACTGTGAGAGATACAGTTGAAGATCGTATTTTAGCTCTGCAGCAAAAGAAGCGGAAGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACACTTGATGATTTAAAATACTTGTTCAGGATGTGA 3624 0.4183 MLDCEHENQRRPSQACFSLYGFPGCYRESSSQGESNVSVWGDNSNLSTWKGENESQFNHAAGDVESEHASYSSTIENGDVGLEDFVEDTVGGVSGQQESDSCTSFQISDTDADRSLHAVTSTDSTLHQGSHVRSDFSDYYLFSNCYQGTDDIAFVDDPSLGFLPNGICSQLWTNEEMTSNLKAENVEFCTDMAPVSSGMHLVGTGGISIQDSQFMLADSSYPSFFSDNVTFEEKASVPFSNCASYMPHQDQSLCWKDERDELMTPYQNNFHNNFAGFNIDQEAKQLSDVFPSMECQSYGCFASENNYRVTTSGIANHYRDIIDGTASELQGNAGNLNLKALDQSLPCVQASIAGEKQFGCVKREGGGKSVDSNSSKRSAVNFQVEDDSDACIIEHISHPAPTSQSADIGNSFRISQSSRSVDSQPYMVGSTRLRACDERNILQVALQDLSEPNSEVSPPDGLLAIPLLRHQRIALSWMVQKEKSSLNCPGGILADDQGLGKTVSTIALILKERAPILSACPSAQKGELETLNLDAEDHKFPQNGLVKKESETCGDMSIGNPTESKSLMMQAKGRLSAGTLIVCPTSVLRQWAEELHNKVTSQANLSVLVYHGSNRTKDPHEVAKYDVVLTTYAIVSVEVPMQPVVDKDDEEKGTFEDPDIPSRKRKGPSNSRKNGKKRKDNTMLEGIAQPLAMVSWFRVVLDEAQSIKNHKTQVARACSGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPFDIYTSFRSMIKIPISRSPAEGYSFIRAVLKKIMLRRTKGTLLDGEPIISLPPKFVELKQVDFSREERDFYSRLEADSRVQFQEYADAGTVKQNYVNILFMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPQDKQVSLCGICNDPPEDAVVSICGHVFCNQCISEHLTGDDNQCAATNCKTQLSMSSVFSKATLNSCLSNHDCDNSPGCSGSQVEEFEPWSQSQPYDSSKIKAALEVLKSLGKVQCYTSKNISLPSTFAENTDCPGISSDVNNGESFKDFPESQNLSGNRWSNSVGEKAIVFSQWTRMLDLLEVCLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTLDDLKYLFRM* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1520 1207 SMART ultradead3 463 768 IPR014001 -
Dod04g1520 1207 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 482 751 IPR014001 -
Dod04g1520 1207 CDD SF2_C_SNF 1052 1159 - -
Dod04g1520 1207 SUPERFAMILY RING/U-box 892 945 - -
Dod04g1520 1207 SMART helicmild6 1066 1149 IPR001650 -
Dod04g1520 1207 MobiDBLite consensus disorder prediction 645 682 - -
Dod04g1520 1207 Pfam SNF2-related domain 479 866 IPR000330 GO:0005524|GO:0140658
Dod04g1520 1207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 886 946 IPR013083 -
Dod04g1520 1207 CDD DEXDc_SHPRH-like 467 789 - -
Dod04g1520 1207 Pfam Zinc finger, C3HC4 type (RING finger) 895 931 IPR018957 GO:0046872
Dod04g1520 1207 ProSiteProfiles Zinc finger RING-type profile. 895 930 IPR001841 -
Dod04g1520 1207 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 395 1206 - -
Dod04g1520 1207 Gene3D - 545 647 IPR038718 -
Dod04g1520 1207 Gene3D - 678 790 IPR038718 -
Dod04g1520 1207 MobiDBLite consensus disorder prediction 645 666 - -
Dod04g1520 1207 ProSitePatterns Zinc finger RING-type signature. 910 919 IPR017907 -
Dod04g1520 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 453 789 IPR027417 -
Dod04g1520 1207 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 395 1206 - -
Dod04g1520 1207 SMART ring_2 895 933 IPR001841 -
Dod04g1520 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 797 1206 IPR027417 -
Dod04g1520 1207 Gene3D - 804 1207 IPR027417 -
Dod04g1520 1207 Gene3D - 442 531 IPR038718 -
Dod04g1520 1207 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1043 1202 IPR001650 -
Dod04g1520 1207 Pfam Helicase conserved C-terminal domain 1049 1149 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1520 Dod-Chr4 37034765 37043623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1520 429 1205 RAD5 or RAD16-like Gene Family AT1G61140 62.312 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dod04g1520 SNF2_N 9.4e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1520 - - lang:109332935 1674.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1520 04 37034765 37043623 Dod04g1520 04 37034765 37043623 ECH
Dod04g1520 04 37034765 37043623 Dod03g0376 03 4450667 4460107 PCT