Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1478 ATGGCCTTTGATCACTACTACTCGAAGGAATGGAAAAAAAGGGTCCCAGATGCCGTGTCAGATTCAGAAAATTCCAACGGTTGTTTTGATTGCAACATCTGCTTAGACTTCGTTAATGAGCCAGTGGTAACTCTCTGTGGCCACCTCTACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGCTCTTCTCTTGCACCTGATGAGCACCCACAATGCCCTGTCTGCAAGGCTGATATATCCCACACCACAATGGTTCCCCTCTATGGCCGCGGTCACGGCGACTGCGAAGGGAAGGCATCCCGCCGGGACATCCTCGTGCCGCCGAGACCACCTGCTTCCGGTGCTCAGTCTCTGCTGGGGACATCATCATCTTCTCAGAGTGGTCAGCAGCTTCCTTATCGCAATCTTTATCAGGGTCATCAACACTTCAACATTGCTCAAGAGGAGGATGGTGGCACATCACAAATGCTCAATCTTGGTGCCTCCATGACACCGGGGTTCCCTCACCCTGTTGTTGGGATGTTTGGGGAAATGTTTTACACCAGAGTTTTTGGCAATTCGGAGAATCTGTATGCATACCCGAATTCTTATCACATGATGGGGAGTAACAGCCCTAGGTTGAGGAGGCAAGAGATGCAGGCAGACAAATCATTGAACAGAATTTCGATTTTTCTCCTTTGCTGTTTTCTTCTGTGTCTTATTGTCTTCTGA 717 0.4937 MAFDHYYSKEWKKRVPDAVSDSENSNGCFDCNICLDFVNEPVVTLCGHLYCWPCIYKWLHVQSSSLAPDEHPQCPVCKADISHTTMVPLYGRGHGDCEGKASRRDILVPPRPPASGAQSLLGTSSSSQSGQQLPYRNLYQGHQHFNIAQEEDGGTSQMLNLGASMTPGFPHPVVGMFGEMFYTRVFGNSENLYAYPNSYHMMGSNSPRLRRQEMQADKSLNRISIFLLCCFLLCLIVF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1478 238 MobiDBLite consensus disorder prediction 117 131 - -
Dod04g1478 238 SUPERFAMILY RING/U-box 27 90 - -
Dod04g1478 238 SMART ring_2 31 77 IPR001841 -
Dod04g1478 238 MobiDBLite consensus disorder prediction 101 131 - -
Dod04g1478 238 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Dod04g1478 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dod04g1478 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 106 IPR013083 -
Dod04g1478 238 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Dod04g1478 238 CDD RING-HC_AtRMA_like 29 79 - -
Dod04g1478 238 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
Dod04g1478 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1478 Dod-Chr4 36456922 36459088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1478 2 224 C3H Transcription Factor Family AT4G27470 39.827 3.93e-49 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1478 K10666 - gmx:100779793 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1478 04 36456922 36459088 Dod03g0412 03 4997286 4998269 PCT