Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1455 ATGAAGTTCAACATTGCTAATCCCACCACTGGATGCCAGAAGAAGCTTGAAATCGACGACGATCAGAAGCTACGGGCATTCTGGGACAAAAGGATCTCACAGGAGGTTGTTGGTGATGCTCTGGGTGAGGAATTCAAAGGCTATGTCTTCAAAATCACCGGTGGCTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTGCGCCTCTTGCTTCACAGAGGAACTCCTTGTTTCCGTGGTTATGGAAGGCGTAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGTCCAGACCTCTCTGTTCTGAACTTGGTGATTGTGAAGAAGGGTGACAATGATTTGCCCGGCCTCACTGACATCGAGAAGCCAAGGATGAGGGGCCCAAAGAGAGCATCGAAAATCCGCAAGCTGTTCAACCTGTCAAAGGAGGATGATGTGAGGAAGTATGTTAACACCTACCGTAGAACCTTTACAACCAAAAATGGGAAAAAGGTGAGCAAAGCACCAAAGATACAACGACTGGTCACTCCTTTGACACTCCAAAGGAAGCGAGCAAGGATTGCTGACAAGAAGAAGAGAATTGCCAAGGCAAAATCAGATGCGGCGGAGTACCAGAAGCTCCTTGCGTCCAGGTTGAAGGAGCAGAGGGAACGCCGTAGTGAGAGCTTGGCGAAGAGGAGATCCAAACTTTCCAGTGCTGCCTCCAAGCCAACTGCATAG 747 0.4967 MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVVGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGDNDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSDAAEYQKLLASRLKEQRERRSESLAKRRSKLSSAASKPTA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1455 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 247 - -
Dod04g1455 248 Gene3D - 133 234 - -
Dod04g1455 248 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Dod04g1455 248 PANTHER 40S RIBOSOMAL PROTEIN S6 1 247 IPR001377 GO:0003735|GO:0005840|GO:0006412
Dod04g1455 248 Coils Coil 189 216 - -
Dod04g1455 248 MobiDBLite consensus disorder prediction 222 248 - -
Dod04g1455 248 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Dod04g1455 248 PIRSF RPS6e 1 248 IPR014401 GO:0003735|GO:0005840|GO:0006412
Dod04g1455 248 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1455 Dod-Chr4 36195558 36198134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1455 1 248 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.984 2.41e-122 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1455 K02991 - gmx:100800507 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1455 04 36195558 36198134 Dod03g0435 03 5324875 5327276 PCT