Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1451 ATGGACACAAGCAGCAGGTCAGAGGGGAAGAGGACCCTGAGGCACAAAGATGAGGATAATAATAATGATGAGGAAGAAGAGGAAGAGGAAGAGGCCATGGGTTATGATGGAGAAGAAGAATATGGGAGGAGGAAGAGGGTAATGACCACAGATCTCTACAGCAGGAGAGGGTCCAAAGCTGGAGGAAGCTCATCAATGCCACCTTCTTGTCAAGTACATAACTGTGACTCTGATCTAAGCGAGGCTAAGCAGTATCACAGAAGACATAAGGTCTGTGAGTATCATGCCAAGGCTGCTTCCGTAGACATTGCAGGGCAGCAGCAAAGGTTTTGCCAGCAATGCAGCAGGTTCCATGAGCTGTCAGAATTTGATGAGTCAAAAAGGAGTTGTAGAAGGCGCTTGGCGGGGCATAACGAGAGGCGTCGCAAAAATGCAACTGACTATCATGGAGAATGA 456 0.4803 MDTSSRSEGKRTLRHKDEDNNNDEEEEEEEEAMGYDGEEEYGRRKRVMTTDLYSRRGSKAGGSSSMPPSCQVHNCDSDLSEAKQYHRRHKVCEYHAKAASVDIAGQQQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNATDYHGE* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1451 151 SUPERFAMILY SBT domain 68 148 IPR036893 GO:0003677|GO:0005634
Dod04g1451 151 MobiDBLite consensus disorder prediction 1 20 - -
Dod04g1451 151 MobiDBLite consensus disorder prediction 37 52 - -
Dod04g1451 151 MobiDBLite consensus disorder prediction 21 36 - -
Dod04g1451 151 Pfam SBP domain 70 143 IPR004333 GO:0003677
Dod04g1451 151 MobiDBLite consensus disorder prediction 56 71 - -
Dod04g1451 151 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 18 145 IPR044817 GO:0003677
Dod04g1451 151 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Dod04g1451 151 PIRSF SBP 6 151 IPR017238 GO:0003677|GO:0003700|GO:0009908
Dod04g1451 151 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Dod04g1451 151 MobiDBLite consensus disorder prediction 1 71 - -
Dod04g1451 151 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 18 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1451 Dod-Chr4 36118694 36121062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1451 61 147 SBP-box Gene Family AT2G33810 70.115 1.06e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod04g1451 SBP 6.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1451 - - aip:107631217 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1451 04 36118694 36121062 Dod04g1451 04 36118694 36121062 ECH
Dod03g0441 03 5396016 5399342 Dod04g1451 04 36118694 36121062 ECH
Dod10g0972 10 27726838 27728179 Dod04g1451 04 36118694 36121062 ECH
Dod10g1239 10 32158946 32161200 Dod04g1451 04 36118694 36121062 ECH
Dod04g1451 04 36118694 36121062 Dod03g0441 03 5396016 5399342 PCT