Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1449 ATGCCAGCGCAGAAGCGCTTGCAAGAGGAGCACGACGATGCTCTGCGCGCCGCCGACGAAGCTGAGCAGCCCGAAGATGAAGTCGAATCCGATCGAAGCAACTCTTGGAGCAACGGCGACAAGGAGGAATATGTGATTATAAAATTGTCAGATGTACGCAAGGAAGTTCAGTGCCCTATCTGCCTTGGCATCATTCGAAAAACAAGAACTGTAATGGAATGCCTGCATCGCTTTTGCAGAGAGTGCATAGACAAATCTATGCGCCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGCCGACGTTCTCTAAGAGATGACCCAAACTATGATGCCTTGATTGCTGCTCTCTATCCCAATATTGACAAGTATGAAGAGGAGGAATTGGCTTTACATGAAGCTGAGGTCACTCACAATAAACAGATCCAAGCTTCCATTGCCCAGACTCTTCAACGACAGACAGAAGCACTGGGAAAGAAACGGAATGCCAAAGCAACAGCAGTGGCTTTTGTGAGGAGATCACGAGGTAACCATCGAACTTCTCGTTTGAGAAGAAGAAGAAACTTTAGAAATGCAAGTGAACTTCCAGAAGCCAATGACAATGAGGATACGAATGATAATGATGATGAGGGAAAGGGTTCATCTTCTGGCGATGAGCAGACAGAAACCAAAACAAAAAGATGCAAAAGAGAGCAAGAAACACAGTTTCCTCAGCATTCTGCCTCCACCGATGCAGATGTAGCTGGTGAGGAAAATACTCCTGATGTGGATAGAGAGATCATAACTTCATCTGGTACACTTGCCTGGGGAAAGAATGGCCAACGGAGTAACACCCGAGTCAGCAGCGGTAAGAATTCCAAAGGCAGTAGTCCTCTTTCCAAAGGCAGTCCTCTTACCAAAGGCAGTCACACCTCCAGATTGGTTGATCGACTCCATAGCTCTGAAGAAAATGATGACGAGTTGGATATCTTTCTTGCGGTTGTCTCTTTGGATGAGCAAAGAATACCAAGTTTGGAGGAGCCATACCTTCAGTGCAAGCCTACTCTGTCAGTCAGTTCACTGAGCAAGTATGTTGCACTTAAGACTGCGCTGCGGGCTGATGAAGTTGAATTATGCTTGGTAGAAGAGCCGGGAGAGCCGCAATTCAAAATTATAAGAGGAGAAAAAACAGTTGATCCAGACAAAGATAAGTTGCGTGTTCTTGGAGAACAGGAGACGTTGGCTGAACTGAAAAGTTCCAATCTCATCAGAGGTTATCTGCTCATGGCTTATAGGAGGAAGTTGCGGAACTCGCACACCGTTCGCTAG 1317 0.4632 MPAQKRLQEEHDDALRAADEAEQPEDEVESDRSNSWSNGDKEEYVIIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPNIDKYEEEELALHEAEVTHNKQIQASIAQTLQRQTEALGKKRNAKATAVAFVRRSRGNHRTSRLRRRRNFRNASELPEANDNEDTNDNDDEGKGSSSGDEQTETKTKRCKREQETQFPQHSASTDADVAGEENTPDVDREIITSSGTLAWGKNGQRSNTRVSSGKNSKGSSPLSKGSPLTKGSHTSRLVDRLHSSEENDDELDIFLAVVSLDEQRIPSLEEPYLQCKPTLSVSSLSKYVALKTALRADEVELCLVEEPGEPQFKIIRGEKTVDPDKDKLRVLGEQETLAELKSSNLIRGYLLMAYRRKLRNSHTVR* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1449 438 ProSitePatterns Zinc finger RING-type signature. 74 83 IPR017907 -
Dod04g1449 438 SUPERFAMILY RING/U-box 43 129 - -
Dod04g1449 438 ProSiteProfiles Zinc finger RING-type profile. 58 98 IPR001841 -
Dod04g1449 438 CDD RING-HC_RING1_like 58 98 - -
Dod04g1449 438 MobiDBLite consensus disorder prediction 1 38 - -
Dod04g1449 438 MobiDBLite consensus disorder prediction 1 18 - -
Dod04g1449 438 MobiDBLite consensus disorder prediction 211 237 - -
Dod04g1449 438 PANTHER OS11G0578200 PROTEIN 1 431 - -
Dod04g1449 438 SMART ring_2 58 97 IPR001841 -
Dod04g1449 438 PANTHER OS11G0578200 PROTEIN 1 431 IPR044592 -
Dod04g1449 438 Pfam Zinc finger, C3HC4 type (RING finger) 57 97 - -
Dod04g1449 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 128 IPR013083 -
Dod04g1449 438 MobiDBLite consensus disorder prediction 158 310 - -
Dod04g1449 438 MobiDBLite consensus disorder prediction 268 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1449 Dod-Chr4 36094035 36098870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1449 51 121 C3H Transcription Factor Family AT3G23060 33.784 1.05e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1449 K10695 - zju:107425269 434.876