Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1417 ATGGCGGGTTTGATCGATCTCAACACCACAGAGGACGATGAAACGCCGTCGTATGGTTCCTCTGCTTCTTCTTCTTCTTCTTCTTCTTCACACTCGGGAACAAGCACTGCTTCAGCACTTGCTCCTCCTCCTCCTCCTCCTTCTTCTTCGGTGTGTTTGGAGCTGTGGCACGCGTGTGCAGGTCCAATGATCTCGTTGCCGAAGAAAGGAAGCTTGGTAGTGTACTTCCCACAGGGACACTTGGAACAGCAAGTTCAGGATTTTCCTCCGGTATCAGCCGGCAGTAACAACAACATCCCACCCCACGTGTTCTGTCGCGTTCTCGATGTTAAACTCCATGCTGAGGAAGGGAGCGATGAAGTTTATTGCCAAGTTTTGCTGGTTCCTGAAAATGCGCAAGTGGAGCAAAAATTGCGGGAAGGGGAAATTGATGCTGATGGTGAAGAGGAGGACACTGAAGCTGTGATGAAGTCAACAATACCCCACATGTTCTGCAAGACTCTGACGGCTTCTGATACCAGCACTCATGGCGGATTCTCTGTGCCTCGTAGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACGATCAACAGAGGCCTTCACAAGAGCTTGTAGCAAAGGATCTGCATGGCCGTGAATGGAGGTTTCGACATATTTACAGGGGGCAGCCACGAAGACATTTGCTTACGACCGGATGGAGTGCATTTGTGAACAAGAAGAAGCTTGTGTGTGGAGATGCTGTACTGTTTCTGAGGGGTGAGGATGGTCAACTGAGATTGGGAATTCGTAGGGCAGCTCAATTGAAAAGTGGCAGTAACTTTCCAGCTCTCCCTGGCCAGCAATTGAATCATAGCTCTGTCGTGGATGTGCTTAATGCTTTATCTACAAGATGTGCCCTCAGCATTCCCTATAATCCTAGGGTCAGCACATCTGAGTTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCATATACGGTTGGAATGAGGTTCAGAATGCATTTTGAAACTGAAGATGCTGCAGACCAAAGATTCACAGGATTAGTTGTTGGTATTAATGATCTCGATCCTGTTAGATGGCCTGGATCAAAATGGAAATGTTTACTGGTAAGGTGGGATGACTTAGAAGCCACAAGGCATAATAATAGGGTTTCCCCATGGGAGGTTGAGCCATCTGGATCATCTTCCAGTGCCAATAACCTAATGGCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCAAAGCTAGAATTTCCAGTTCCTAATGGGATCAGGACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATAATCCTGTTGATGGTATTAATGCTCAGTGTCACCTGTTGTCTGAATTAAGGAGATGCTATACTGGGATTACTACAGCAGGACATAGTACAATCCCGCAAGTGAGTTCTGATGTCTCCTGCAATGGCATAGGCTATAGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTTCAAGCCAACCATATGGAAGAGCCTTGTCTATTGATGAGGCTTGTGGGAATGGTCGCTTCGGATTTTTTGGTGGTTACCAGATGCTAGGATCCAGAAATGGATGGTCGGCCCATAAGAACAGTTCTTCTCATTTGCATGCATCTAACCCATCCGGGCAAGTGTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCATTCAATCCAGTTTCAAACTCTGAATATAATAACAAAAGCAATCAAGTGATGGAAGGTAAAGCCCATCAACCAGGTTCATATGCTTCTGAGGTGAAAGGTGGATTATTTGCATCATTCCCATCTCATGAGACTATTTTCCGTGCACAAGCTCTGAAAGGCACAAATTCTGATAGTATTTTGAATTTGCATGATCAGTTGGGTAGTTCACGATCACATGATTCGACATCAGTAATGAGAGGCAGTCAAGAGTTGGTTTCCTCATGTAAAAGTAGCTGCAGAGTCTTTGGTTTTTCATTAACTGCAGGCGCTTCCATCGCAAATGAAGAGTCCGACCCCTCTACAGTCCATTGTCAATTAGATTCTGGACCTTCCTGTACACGACATGTTGAAGATGATTTCCATCCAGGGCATCCTGTTAAGAGCAAGGCAGTCACAAGTAACTGTACCAAAGGTGCTGAAATGTTCATTTTGCCCTCTTAA 2220 0.4532 MAGLIDLNTTEDDETPSYGSSASSSSSSSSHSGTSTASALAPPPPPPSSSVCLELWHACAGPMISLPKKGSLVVYFPQGHLEQQVQDFPPVSAGSNNNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENAQVEQKLREGEIDADGEEEDTEAVMKSTIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYDQQRPSQELVAKDLHGREWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVCGDAVLFLRGEDGQLRLGIRRAAQLKSGSNFPALPGQQLNHSSVVDVLNALSTRCALSIPYNPRVSTSEFIIPIHKFLKSLDYSYTVGMRFRMHFETEDAADQRFTGLVVGINDLDPVRWPGSKWKCLLVRWDDLEATRHNNRVSPWEVEPSGSSSSANNLMAAGLKRTKIGLPSAKLEFPVPNGIRTSDFGESLRFQKVLQGQEILGVNNPVDGINAQCHLLSELRRCYTGITTAGHSTIPQVSSDVSCNGIGYSESFRFQKVLQGQEILSSQPYGRALSIDEACGNGRFGFFGGYQMLGSRNGWSAHKNSSSHLHASNPSGQVSSPSSVLMFQQAFNPVSNSEYNNKSNQVMEGKAHQPGSYASEVKGGLFASFPSHETIFRAQALKGTNSDSILNLHDQLGSSRSHDSTSVMRGSQELVSSCKSSCRVFGFSLTAGASIANEESDPSTVHCQLDSGPSCTRHVEDDFHPGHPVKSKAVTSNCTKGAEMFILPS* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1417 739 Gene3D - 328 402 - -
Dod04g1417 739 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 731 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod04g1417 739 MobiDBLite consensus disorder prediction 552 571 - -
Dod04g1417 739 SUPERFAMILY DNA-binding pseudobarrel domain 161 275 IPR015300 -
Dod04g1417 739 CDD B3_DNA 162 264 IPR003340 GO:0003677
Dod04g1417 739 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Dod04g1417 739 PANTHER AUXIN RESPONSE FACTOR 42 731 - -
Dod04g1417 739 Coils Coil 131 151 - -
Dod04g1417 739 Gene3D - 162 266 IPR015300 -
Dod04g1417 739 SMART B3_2 164 266 IPR003340 GO:0003677
Dod04g1417 739 MobiDBLite consensus disorder prediction 1 46 - -
Dod04g1417 739 MobiDBLite consensus disorder prediction 10 38 - -
Dod04g1417 739 Pfam Auxin response factor 291 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod04g1417 739 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1417 Dod-Chr4 35623024 35629378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1417 163 514 B3 DNA Binding Superfamily AT2G33860 58.640 3.47e-142 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod04g1417 B3 2.7e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1417 K14486 - gmx:100808119 1065.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1417 04 35623024 35629378 Dod04g1417 04 35623024 35629378 ECH