Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1396 ATGGATATTCATGCAGCTTCTGAAGGCATTCTTGAGAATGTATGGGCCAAAATTATCAGCAGTGATAGAGCAGGTCATGCAGCAGAATCTTCCACCACATGGGAAGAACTTCCTAATCTTAATGCAAGAGATGAGTCTTTGCAAATTCTGGAAAGGCTTCCAAGTTTGGGGAGATGGATTTCAATGGGAGCTGACTTCTGGGAAGAAATTTTAGATGGTTTTCTGCTGCATGCTGCGAGCAAAACAGAAGATACTAGTAATACCAATGTGAAAATTGGAAGTGATGCTGCTGTATCGAACAAGAAGGTAGAAGATGCTGTAAGAGGAGATAAGGTAATTGCAAAGCACTACAGGGGAGTAAGGAGAAGGCCATGGGGTAAGTATGCAGCAGAAATTAGAGACTCATCCAAGAAAGGTGCTAGAGTTTGGCTGGGGACATTTGAAACTGCTGAAGAAGCAGCTTTGGCTTATGACAAGGCTGCTTTGAGAATAAGGGGTCCAAAGGCACACCTCAATTTCCCACCTGAGAAAGTTGCACAGCAGGCTTCAGGATTTGCACCAGAATGGAAGAAGTGA 576 0.4375 MDIHAASEGILENVWAKIISSDRAGHAAESSTTWEELPNLNARDESLQILERLPSLGRWISMGADFWEEILDGFLLHAASKTEDTSNTNVKIGSDAAVSNKKVEDAVRGDKVIAKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAHLNFPPEKVAQQASGFAPEWKK* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1396 191 Pfam AP2 domain 116 166 IPR001471 GO:0003700|GO:0006355
Dod04g1396 191 ProSiteProfiles AP2/ERF domain profile. 116 174 IPR001471 GO:0003700|GO:0006355
Dod04g1396 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 12 183 - -
Dod04g1396 191 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700|GO:0006355
Dod04g1396 191 SUPERFAMILY DNA-binding domain 116 175 IPR016177 GO:0003677
Dod04g1396 191 SMART rav1_2 116 180 IPR001471 GO:0003700|GO:0006355
Dod04g1396 191 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 183 - -
Dod04g1396 191 CDD AP2 115 174 IPR001471 GO:0003700|GO:0006355
Dod04g1396 191 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Dod04g1396 191 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1396 Dod-Chr4 35333271 35334159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1396 10 178 AP2-EREBP Transcription Factor Family AT4G18450 47.126 1.02e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod04g1396 AP2 9.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1396 - - gmx:100820226 258.07