Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1388 ATGAATTTTCATTCAACTAGTCCTCAAGCACTTGAAAGGAGTTGGCTCTCCTTCTATTTACTCATCTCCTTTGTTCTCATTAATGGCTGCTGCCAAGCTGAGGCTACTAATGGAGACAACAAAGTTATATCCATTGGTGCAATCATTGATGTTAACTCTAGAATTGGAAAAGAGCAGCAAGTAGCTATGGACATTGCAGCTCAAAGTTACAATAACATTTCAAAGACCTATAAACTGGCTATCCATTTTAAGGACCCCACCAAGGATTCCTTCAGAGCCACTTCCCTTGCTGAAGATATGATCGAAAAGCAGAAGGTGCAAGTGATTGTAGGAATGCACAGATGGACAGAAGCAGCTTTGGTAGCTGAACTAGGAAGCCAAGCTCAAGTTCCTGTCATATCCTTTGCAGCACCTGCAATTACCCCAACATTGATGGCAAATCGCTGGCCTTTTTTGGTGAGCCTGGCTAACAATGGCACAACATATGCAAAATGCATTGCAGATATAGTGCATGCTTATAGCTGGCAAAGAGTAGTAGTTATTTATGAAGATGACGCCTATGGTGGAGATAATGGTATGATAGGGCTGCTATCTGAGGCTCTCCAAGATGTAGGTTCAATGATTGAGTACCGCTTGGCTCTCCCATCACCTTCTTATTTGCCTGATCCTGGCGAGTTTGTTCGTGATGAGCTGGTTAAGTTAATTGAAAATACACAATCTCGGGTATTCATTGTTCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAGAGAAGCCTCACAGATGGGACTTGTAGGTAGAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGCTGGACTCTGTCAATAAGTCTACTGTTTCCTATATGGATGGTGCTTTAGGAATCAAGACCTACTACTCTGAAAATAGCATTGAGTATCAAGATTTTGAGGCTCAGTTCCGGAGAGCATTTCGGGCAAAGTATCCTGAGGAAGATAACCGCAACCCGGGATTTTATGCTCTGAAAGCATACGATAGTATTAAAATTGTTGCACAAGCAGTAGATAGAATGGCCAGTGGCAATAGTAGTGGCAGAAAGACTTTACTAGGACAAATTTTGTCTAGCAGTTTCCTTGGTTTGAGTGGAGAAATTCAATTTGAAGCACTACAGCTCAACCAGAATACTACCTTAAGGATTGTAAATGTAGACGGAAAGAGTTACAGAGAATTGGACTTTTGGACTCTAGAACATGGGTTCATCACCAGCCTCCCTACAGGACAAGGTGAAAATAATTCTTTTAGGAACACAGAAAGTTTAAGTGGTTTGGTAATTTGGCCAGGGAAATTGTTGAGAGCTCCAAGAGGCTGGAATCTGCCTACTAAACAAAATCCAATGAAAATTGCAGTGCCGGGTAGAACTTCATTTTCCAAGTTTGTCAAGGTTTATTATGGGGAGCATGGAAACCCAAATAAATATACCGGATTCTGCATTGATATTTTTGATAAGGTGTTAGAATATTTGGAGTATGATCTGCCATATGATTACTACCCTATCAATGGAACCTATGATGACCTGGTTCAACTTGTCTATAACAAGACTTATGATGCTGTTGTTGGGGATATAACCATACTAGCAGACAGATTGCAATATGTAGATTTTACTGTGCCATATGCAGAATCAGGATTATCAATGATAGTTCCAGCAGAGTCAGAGGAATCTGCATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGCGGTAACTGGTGCTATCTTGATTTACACAATGTTGGTAGTGTGGTACCTGGAGCGAAAATCTAATCCGGAGTTTCATGGCAACTGGAAAAGCCAAATTGGCACTGCTCTTTGGTTTACCTTCTCCTCTCTATTCTTTGCTCATAGGGAGAACTTATATAGCAACTTAAGTCGTGTGGTTATGGTATCATGGCTCTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCAATGCTCACAGTCAAACAACTGCTACCAAATGTGACAGACATTGAGTGGCTGAAGAAGAACAACATGACAATCGGTTGTGATGGAGATTCTTTTGTCAGAGAATACCTAGAGAAAGTCGAAGGGTTCGGACCAAAAAACATCATGAAAATGAGTAGCGAAGACAATTATGTTGATGCATTCAATAACCACACAATAGCAGCTGCTTTTCTCGAAATCCCTTATGAAAAAGTATACATCAGTAAATACTGCAAGGGGTACTCTGGCTCCACACCTACCATCAGATTTGGAGGACTGGGATTTATGTTCCAGAAAGGCTCCCCAGTGGCCAAAGATGTTTCTAAAGCTATATTGCAGCTCTTAGAGCAGGGAGAAGTGAAGAGTTTGGAAGAGAAATGGTTCAACCCCGCAGGCGACTGTTCTAACAATGTGAACTCAAACAACACAGAAAGTTTGAAGCTTGGAAGTTTCTGGGTTCTCTATGTGATTTCTGGTGCAACGTCCACCATTTGTTTTCTAATTTCTACCATCCATTCGCTAAAATCTAGTCAAACAACACAGGGAAACGGCACCCCGAGTTATGAGAGCCCTTGGAGAAGGGCTGTTAAATTAGCTAAGCAGATTCGTAGCAGAAGGCATAGTAAAGATAACATAGCACAGGAACATGTTACTGAATGTTCTTCCGATTGGGATTATACCAGCACCACTGCTACCCCTGAACACCACCGGGCATTGGCTTCTCAGTTGCCTGAAATCGTGATCTCATCCCCTCCAACACAGACACCAATGACAACTCCTGATCATAGATCATGA 2802 0.4147 MNFHSTSPQALERSWLSFYLLISFVLINGCCQAEATNGDNKVISIGAIIDVNSRIGKEQQVAMDIAAQSYNNISKTYKLAIHFKDPTKDSFRATSLAEDMIEKQKVQVIVGMHRWTEAALVAELGSQAQVPVISFAAPAITPTLMANRWPFLVSLANNGTTYAKCIADIVHAYSWQRVVVIYEDDAYGGDNGMIGLLSEALQDVGSMIEYRLALPSPSYLPDPGEFVRDELVKLIENTQSRVFIVLQSSLEMVIHLFREASQMGLVGRESAWIIPESITNLLDSVNKSTVSYMDGALGIKTYYSENSIEYQDFEAQFRRAFRAKYPEEDNRNPGFYALKAYDSIKIVAQAVDRMASGNSSGRKTLLGQILSSSFLGLSGEIQFEALQLNQNTTLRIVNVDGKSYRELDFWTLEHGFITSLPTGQGENNSFRNTESLSGLVIWPGKLLRAPRGWNLPTKQNPMKIAVPGRTSFSKFVKVYYGEHGNPNKYTGFCIDIFDKVLEYLEYDLPYDYYPINGTYDDLVQLVYNKTYDAVVGDITILADRLQYVDFTVPYAESGLSMIVPAESEESAWMFMKPFTWQMWAVTGAILIYTMLVVWYLERKSNPEFHGNWKSQIGTALWFTFSSLFFAHRENLYSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVKQLLPNVTDIEWLKKNNMTIGCDGDSFVREYLEKVEGFGPKNIMKMSSEDNYVDAFNNHTIAAAFLEIPYEKVYISKYCKGYSGSTPTIRFGGLGFMFQKGSPVAKDVSKAILQLLEQGEVKSLEEKWFNPAGDCSNNVNSNNTESLKLGSFWVLYVISGATSTICFLISTIHSLKSSQTTQGNGTPSYESPWRRAVKLAKQIRSRRHSKDNIAQEHVTECSSDWDYTSTTATPEHHRALASQLPEIVISSPPTQTPMTTPDHRS* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1388 933 SUPERFAMILY Periplasmic binding protein-like II 437 798 - -
Dod04g1388 933 SUPERFAMILY Periplasmic binding protein-like I 40 453 IPR028082 -
Dod04g1388 933 MobiDBLite consensus disorder prediction 912 933 - -
Dod04g1388 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 911 - -
Dod04g1388 933 Gene3D - 461 571 - -
Dod04g1388 933 Pfam Bacterial extracellular solute-binding proteins, family 3 485 798 IPR001638 -
Dod04g1388 933 Gene3D - 572 703 - -
Dod04g1388 933 SMART GluR_14 463 799 IPR001320 GO:0015276|GO:0016020
Dod04g1388 933 CDD GluR_Plant 460 797 - -
Dod04g1388 933 Pfam Ligand-gated ion channel 799 828 IPR001320 GO:0015276|GO:0016020
Dod04g1388 933 Gene3D - 161 331 - -
Dod04g1388 933 PANTHER GLUTAMATE RECEPTOR 3.4 23 911 - -
Dod04g1388 933 MobiDBLite consensus disorder prediction 915 933 - -
Dod04g1388 933 Pfam Receptor family ligand binding region 60 401 IPR001828 -
Dod04g1388 933 CDD PBP1_GABAb_receptor_plant 44 416 IPR044440 -
Dod04g1388 933 Gene3D - 716 804 - -
Dod04g1388 933 PIRSF IGluLR_plant 13 924 IPR017103 -
Dod04g1388 933 Gene3D - 350 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1388 Dod-Chr4 35266449 35269813 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1388 7 908 Ion Channels AT2G29120 31.953 1.89e-150 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1388 - - aprc:113859865 1342.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1388 04 35266449 35269813 Dod04g1388 04 35266449 35269813 ECH