Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Dod04g1374 | ATGGATTTCCCCAAAAAGCGCAAGACAGAGGAGAACGGCGACGCCGATTCAACGTCGCCAACAGAACAACAACCACAACAGCAACAGCCATCACCCTCCTCCGCCGCCGCAACCACCACCATCCCCCTCACCCCAGAAGACATCCGCAAGATCCTGCAGCCCTTCACGCAGGACCAGCTCCTCGACCTCCTCCAGTCAGCCTGCCTCCACCACCCCGACGTCCTCGACGCCGTCCGCTCCGTCGCCGACCGCGACTCCACTGCCCGAAAGCTCTTCGTCCGCGGCCTAGCCCCCCAGACGACCACCGACACCCTCCGCTCCGTCTTCTCCGCCTTCGGCAACCTCGACGAGGCCATAGTCATCTTCGACAAGAACACCGGGAAATCCAAGGGCTACGGCTTCGTCACGTTCTCACACGTCGACGGCGCCCTCCTCGCCCTCAAGGACCCAAGCAAGAAGATCGACGGCCGCATGACCGTCACCCAGCTCGCTGCCGCCGGAGGCCCGGGCGCCGCTGCCGCCACCGACATCGCCGCACGGAAGGTTTATGTGGGTGGCGTCCCCTTCGAAATCTCGTCGGAGAAGCTCCTGAGCCACTTCCTGGCGTACGGCGAAAGTGGAAGAAGGGCCCCTAGGGTTTGA | 642 | 0.6386 | MDFPKKRKTEENGDADSTSPTEQQPQQQQPSPSSAAATTTIPLTPEDIRKILQPFTQDQLLDLLQSACLHHPDVLDAVRSVADRDSTARKLFVRGLAPQTTTDTLRSVFSAFGNLDEAIVIFDKNTGKSKGYGFVTFSHVDGALLALKDPSKKIDGRMTVTQLAAAGGPGAAAATDIAARKVYVGGVPFEISSEKLLSHFLAYGESGRRAPRV* | 214 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Dod04g1374 | 213 | CDD | RRM_RBM24_RBM38_like | 89 | 163 | - | - | |
Dod04g1374 | 213 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 89 | 166 | IPR000504 | GO:0003723 | |
Dod04g1374 | 213 | PANTHER | GEO13361P1-RELATED | 1 | 205 | - | - | |
Dod04g1374 | 213 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Dod04g1374 | 213 | MobiDBLite | consensus disorder prediction | 16 | 38 | - | - | |
Dod04g1374 | 213 | Gene3D | - | 3 | 175 | IPR012677 | - | |
Dod04g1374 | 213 | SMART | rrm1_1 | 90 | 162 | IPR000504 | GO:0003723 | |
Dod04g1374 | 213 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 1 | 205 | - | - | |
Dod04g1374 | 213 | SUPERFAMILY | RNA-binding domain, RBD | 88 | 205 | IPR035979 | GO:0003676 | |
Dod04g1374 | 213 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Dod04g1374 | 213 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 91 | 157 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Dod04g1374 | Dod-Chr4 | 35033639 | 35034280 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Dod04g1374 | 46 | 197 | C2H2 Transcription Factor Family | AT2G19380 | 34.868 | 9.37e-26 | 102 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Dod04g1374 | K12741 | - | zju:107411269 | 258.455 |