Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1370 ATGGTTTACTCCTTTTATAACTCGAATTCTTCATCTGCCGATGGCTCTGATATTTCGAGGTTGTTTAGTCCTAATTCTTTGCATGATAACCATGGAGCTTCTTCCACTTGTATTGTTTCGCCAAGTGGGTTGGCATCATCGCAATATTCATTGGTTTTGGGGAGTCAAAAGGGAGAGCCGGTGACTGGATCATCAGCAACCGCAAGGATAGGAAAGAATGACAACTCTGAGTCCAAAGCTTTGGCAGCTTTGAAGAGCCATAGTGAAGCTGAGAGGAGGAGGAGAGAGAGAATAAATGGTCATCTTGCAACTCTACGTGGTTTTGTGCCTTCCACTGAGAAGACGGACAAAGCCACATTACTAGCAAAAGTAATTAGCCAAGTGAAGGAATTGAAGAAGAATGCTACGGAAGCAGGTAAAGGTCTTCTAGTCCCAACGGATTCTGATGAAGTTGAAGTTGAACCATATGATGATGGAGGAGGAGATGGATCCATGTCTTATAAGGCATCTATATGCTGTGATTTCCTACCTGAGATACTTTCTGACATAAGACACACACTTGATGCCCTTCAACTGCAGCTGGTGAGGGCAGAAATGTCAACATTTGAAGGCAGAATGAAGAATGTATTCGTCTATAAATGTTGTAAATGCAGTAATGTTAACAATGAGGCATGCCAAGCTCTTGCAAGTACTGTTCACAAGGCACTGAGTTCTGTACTGGATAAGGCTAATAACTCACTTGAGTACTCACTAAGAGCATCACATCCAAGCAAGCGGAGAAGAATCTGCTTGGTTGAAACATCCACTTCCTCATGCAACCATGACTCTTGTTCGGATTGA 840 0.4286 MVYSFYNSNSSSADGSDISRLFSPNSLHDNHGASSTCIVSPSGLASSQYSLVLGSQKGEPVTGSSATARIGKNDNSESKALAALKSHSEAERRRRERINGHLATLRGFVPSTEKTDKATLLAKVISQVKELKKNATEAGKGLLVPTDSDEVEVEPYDDGGGDGSMSYKASICCDFLPEILSDIRHTLDALQLQLVRAEMSTFEGRMKNVFVYKCCKCSNVNNEACQALASTVHKALSSVLDKANNSLEYSLRASHPSKRRRICLVETSTSSCNHDSCSD* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1370 279 Pfam Helix-loop-helix DNA-binding domain 86 131 IPR011598 GO:0046983
Dod04g1370 279 PANTHER DNA BINDING PROTEIN-LIKE 3 272 - -
Dod04g1370 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 135 IPR036638 GO:0046983
Dod04g1370 279 SMART finulus 88 137 IPR011598 GO:0046983
Dod04g1370 279 MobiDBLite consensus disorder prediction 56 79 - -
Dod04g1370 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 131 IPR011598 GO:0046983
Dod04g1370 279 PANTHER TRANSCRIPTION FACTOR BHLH30 3 272 IPR045847 GO:0003700|GO:0006355
Dod04g1370 279 Gene3D - 78 139 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1370 Dod-Chr4 35012724 35017553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1370 79 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 42.515 2.77e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod04g1370 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1370 - - gmx:100804756 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g1370 04 35012724 35017553 Dod04g1370 04 35012724 35017553 ECH