Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod04g1350 ATGCTGAGTGGTGGTGTTAACCTTTTCGAAACCATGCCTGCAGCACTGGCTCCTATCCTGTGTTTGTTTTTTATTCTCTCACTTCTCTTTGTCCTCTTTCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTTCTCTTCACACCTTCAACCCCACCACCACCACCCCTACTGTCTGCCTTTGACTGTGACATACAAAACAAAACAGGACAGAACATGGTGGACGATTTCATTGTATGCATTGATCGGATTATAGCCTCCACGACTTGTTTTGGATCAGTTGTTGTTGTTGATGACGGCCTCATTCATCATGTTGAGCCGCCAGTTTCTGCTTCTGTTTCTGGCAGTGGTAGTGGAGAAGCAGAAAGGTGCTCCTCCTCCTCTTCTTCTTCTAAAAAGGATGATGATGATGATGATGATGATGATGATGTTGTGGAGTGTAGAATATGTCAGGAAGAAGACCAAGTCCAAGCCATGGAAGCCCCTTGTTCCTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGTATCCAGAGATGGTGCAACAAGAAAGGAAATACAATCTGTGAAATCTGTAATCAGGTATTTTCACCAAACTATTCTCTTCCACCAGTCAGAAGCAATGACATTATGGCACTTGATCTAAGGCAAGAATGGGGGCATGATACTGATCTCCATGTGGCTCTAGTTTCACCAGAGCACCAGTTGCTGCAAAGTGAGTATGAAGATTATGCTATTACACAAACCAGTAGCATTGCTTGCCTCCGCTCCATCACTCTCACTTTGTTGATAATTTTGCTTGTTCGCCAAGCTTTACTGGTCACAATGAACTCTGCAACTAGCCAAGATTCCTCAATAATATTTAATTTTCAGATGTCACTTCTTCAATTTGCCGGTGTTCTTTTGCCGTGTTGTGCAATGGCATGTTCCTGGGAAAGGGGAATGGAATAA 951 0.4353 MLSGGVNLFETMPAALAPILCLFFILSLLFVLFLLSLSLSLSLYLLFTPSTPPPPPLLSAFDCDIQNKTGQNMVDDFIVCIDRIIASTTCFGSVVVVDDGLIHHVEPPVSASVSGSGSGEAERCSSSSSSSKKDDDDDDDDDDVVECRICQEEDQVQAMEAPCSCNGTLKFAHRKCIQRWCNKKGNTICEICNQVFSPNYSLPPVRSNDIMALDLRQEWGHDTDLHVALVSPEHQLLQSEYEDYAITQTSSIACLRSITLTLLIILLVRQALLVTMNSATSQDSSIIFNFQMSLLQFAGVLLPCCAMACSWERGME* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod04g1350 316 SMART ringv_2 146 193 IPR011016 GO:0008270
Dod04g1350 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 203 IPR013083 -
Dod04g1350 316 ProSiteProfiles Zinc finger RING-CH-type profile. 139 199 IPR011016 GO:0008270
Dod04g1350 316 PANTHER OS01G0894600 PROTEIN 73 311 - -
Dod04g1350 316 MobiDBLite consensus disorder prediction 109 142 - -
Dod04g1350 316 SUPERFAMILY RING/U-box 143 196 - -
Dod04g1350 316 MobiDBLite consensus disorder prediction 111 126 - -
Dod04g1350 316 Pfam Protein of unknown function (DUF3675) 198 310 IPR022143 -
Dod04g1350 316 CDD RING_CH-C4HC3_MARCH 147 193 - -
Dod04g1350 316 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 73 311 IPR033275 -
Dod04g1350 316 Pfam RING-variant domain 147 192 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod04g1350 Dod-Chr4 34806990 34811510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod04g1350 140 195 C3H Transcription Factor Family AT2G37950 42.188 6.07e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod04g1350 - - gmx:100812120 321.242